Search Results - "Stochastic simulation algorithm"

From Compositional Petri Net Modeling to Macro and Micro Simulation by Means of Stochastic Simulation and Agent-Based Models

Authors: Elvio Amparore Marco Beccuti Paolo Castagno et al.

Contributors: Elvio Amparore Marco Beccuti Paolo Castagno et al.

Source: ACM Transactions on Modeling and Performance Evaluation of Computing Systems. 9:1-30

Subject Terms: Agent-Based Models, 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Computing methodologies: Simulation environment, Continuous simulation, Agent / discrete model, Modeling methodologies. Stochastic Symmetric Nets, Stochastic Simulation Algorithm, Simulation tool, Stochastic Simulation Algorithm, Agent-Based Models, Stochastic Symmetric Nets

File Description: application/pdf; ELETTRONICO

Towards a Probabilistic Programming Approach to Analyse Collective Adaptive Systems

Authors: Randone, Francesca Doz, Romina Cairoli, Francesca et al.

Source: Lecture Notes in Computer Science ISBN: 9783031737084

Subject Terms: Markov Population Processes, Stochastic Simulation Algorithm, Probabilistic Programming

File Description: application/pdf

Access URL: https://link.springer.com/chapter/10.1007/978-3-031-73709-1_11
https://doi.org/10.1007/978-3-031-73709-1_11
https://hdl.handle.net/11368/3099282

Tensor product algorithms for inference of contact network from epidemiological data

Authors: Sergey Dolgov Dmitry Savostyanov

Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-26 (2024)

Subject Terms: Epidemiological modelling, Networks, Tensor train, Stochastic simulation algorithm, Markov chain Monte Carlo, Bayesian inference, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/9323d51c8f8f4bdd85d9a7d3614c2643

Modeling and Simulation of Stochastic Neutron and Cumulative Deposited Fission Energy Distributions

Authors: Anil Prinja Forrest Brown Christopher Perfetti et al.

Subjects: stochastic simulation algorithm

Index Terms: stochastic simulation algorithm, Master equations, Monte Carlo methods, Boltzmann Master equation, neutron transport, Nuclear Engineering

An Implementation of The Method of Moments on Chemical Systems with Constant and Time-dependent Rates

Authors: Emmanuel O. Adara Roger B. Sidje

Source: Northeast Journal of Complex Systems, Vol 5, Iss 1 (2023)

Subject Terms: stochastic simulation algorithm, Ordinary Differential Equations and Applied Dynamics, Computational Biology, Chemical Master Equation, Numerical Analysis and Computation, Chemical Langevin Equation, 3. Good health, method of moment, VEGF Receptor Model, chemical master equation, Dynamic Systems, chemical langevin equation, vegf receptor model, QA1-939, Method of Moment, SIR Model, Stochastic Simulation Algorithm, sir model, Mathematics

File Description: application/pdf

Access URL: https://doaj.org/article/c72f4fe97bbb48f6ad9973e2f6cd87d7

Efficient Finite-Difference Estimation of Second-Order Parametric Sensitivities for Stochastic Discrete Biochemical Systems

Authors: Fauzia Jabeen Silvana Ilie

Source: Mathematical and Computational Applications, Vol 29, Iss 6, p 120 (2024)

Subject Terms: stochastic simulation algorithm, stochastic models of biochemical kinetics, sensitivity analysis, tau-leaping method, variable time stepping, Applied mathematics. Quantitative methods, T57-57.97, Mathematics, QA1-939, Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://www.mdpi.com/2297-8747/29/6/120; https://doaj.org/toc/1300-686X; https://doaj.org/toc/2297-8747

Access URL: https://doaj.org/article/c50a22d790464bbf942c538b9bb0fb9c

Evaluating different epidemiological models with the identical basic reproduction number ℛ0

Authors: Fan Bai

Source: Journal of Biological Dynamics, Vol 14, Iss 1, Pp 849-870 (2020)

Subject Terms: 0301 basic medicine, probability of a minor outbreak, stochastic simulation algorithm, QH301-705.5, final epidemic size, Basic Reproduction Number, Infections, 01 natural sciences, Models, Biological, Disease Outbreaks, 03 medical and health sciences, 0103 physical sciences, Humans, GE1-350, Computer Simulation, Biology (General), 0101 mathematics, deterministic modelling, Epidemics, Probability, Behavior, 0303 health sciences, Numerical Analysis, Computer-Assisted, Markov Chains, 3. Good health, Environmental sciences, continuous-time markov chain models, Disease Susceptibility

Access URL: https://www.tandfonline.com/doi/pdf/10.1080/17513758.2020.1853833?needAccess=true
https://pubmed.ncbi.nlm.nih.gov/33252319
https://doaj.org/article/3bfeedc2db604f0696cf1e932f9ee0d5
https://www.ncbi.nlm.nih.gov/pubmed/33252319
https://www.tandfonline.com/doi/full/10.1080/17513758.2020.1853833
https://pubmed.ncbi.nlm.nih.gov/33252319/
https://www.tandfonline.com/doi/pdf/10.1080/17513758.2020.1853833

Stochastic Modelling and Simulation of Free Radical Polymerization of Styrene in Microchannels using a Hybrid Gillespie Algorithm

Authors: Iwuchukwu, Edward Uchechukwu Vianna, Ardson dos Santos Junior

Source: The Journal of Engineering and Exact Sciences; Vol. 9 No. 1 (2023); 15327-01e ; The Journal of Engineering and Exact Sciences; Vol. 9 Núm. 1 (2023); 15327-01e ; The Journal of Engineering and Exact Sciences; v. 9 n. 1 (2023); 15327-01e ; 2527-1075

Subject Terms: Polystyrene, Microchannels, Hybrid Stochastic Simulation Algorithm, Gillespie Algorithm, Free Radical Polymerization, Process Intensification

File Description: application/pdf

Relation: https://periodicos.ufv.br/jcec/article/view/15327/7808; https://periodicos.ufv.br/jcec/article/view/15327

Availability: https://periodicos.ufv.br/jcec/article/view/15327
https://doi.org/10.18540/jcecvl9iss1pp15327-01e

Quantifying Parameter Interdependence in Stochastic Discrete Models of Biochemical Systems

Authors: Samaneh Gholami Silvana Ilie

Source: Entropy, Vol 25, Iss 8, p 1168 (2023)

Subject Terms: stochastic simulation algorithm, stochastic biochemical systems, sensitivity analysis, finite-difference methods, parameter subset selection, estimability analysis, Science, Astrophysics, QB460-466, Physics, QC1-999

Relation: https://www.mdpi.com/1099-4300/25/8/1168; https://doaj.org/toc/1099-4300; https://doaj.org/article/e07bece913ca4bd3ad473130c20ff341

Availability: https://doi.org/10.3390/e25081168
https://doaj.org/article/e07bece913ca4bd3ad473130c20ff341

What is special about autocatalysis?

Authors: Peter Schuster

Source: Monatshefte für Chemie - Chemical Monthly. 150:763-775

Subject Terms: Optimization, 0301 basic medicine, Stochastic simulation algorithm, 104022 Theoretical chemistry, Evolution, STOCHASTIC SIMULATION, CHEMICAL-SYSTEMS, Replication, 01 natural sciences, 0104 chemical sciences, MODEL, 102009 Computer simulation, 03 medical and health sciences, 104022 Theoretische Chemie, Autocatalysis, OSCILLATIONS, Master equation, Reaction kinetics, 102009 Computersimulation

File Description: application/pdf

Access URL: https://link.springer.com/content/pdf/10.1007/s00706-019-02437-z.pdf
https://link.springer.com/article/10.1007/s00706-019-02437-z
https://link.springer.com/content/pdf/10.1007/s00706-019-02437-z.pdf
https://hdl.handle.net/11353/10.1071510
https://phaidra.univie.ac.at/o:1071510
https://doi.org/10.1007/s00706-019-02437-z

Computationally-efficient stochastic cluster dynamics method for modeling damage accumulation in irradiated materials

Authors: Hoang, Tuan L Marian, Jaime Bulatov, Vasily V et al.

Source: Journal of Computational Physics. 300

Subject Terms: 40 Engineering (for-2020), 5110 Synchrotrons and Accelerators (for-2020), 51 Physical Sciences (for-2020), Stochastic cluster dynamics, Irradiation damage, Stochastic simulation algorithm, Tau-leaping, cs.DS, cs.DS, 01 Mathematical Sciences (for), 02 Physical Sciences (for), 09 Engineering (for), Applied Mathematics (science-metrix), 40 Engineering (for-2020), 49 Mathematical sciences (for-2020), 51 Physical sciences (for-2020)

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/89q3k3vf
https://escholarship.org/content/qt89q3k3vf/qt89q3k3vf.pdf

Mathematical modelling of oncolytic virotherapy

Authors: Shabala, Alexander Chapman, S. Jon Breward, Chris J. W. et al.

Contributors: Shabala, Alexander Chapman, S. Jon Breward, Chris J. W. et al.

Subject Terms: 616.99, Mathematical biology, Partial differential equations, Probability theory and stochastic processes, oncolytic virotherapy, tumour, modelling, reaction-diffusion, delay differential equations, travelling waves, stochastic simulation algorithm

Access URL: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.639956

Applications of the Delay Stochastic Simulation Algorithm (DSSA) in Mathematical Epidemiology

Authors: Fan Bai

Source: Mathematics ; Volume 10 ; Issue 20 ; Pages: 3759

Subject Terms: delay differential equations, stochastic epidemic models with delays, probability of a minor epidemic outbreak, Markov chain, branching process, numerical methods, delay stochastic simulation algorithm

File Description: application/pdf

Relation: E3: Mathematical Biology; https://dx.doi.org/10.3390/math10203759

Availability: https://doi.org/10.3390/math10203759

A birth–death model to understand bacterial antimicrobial heteroresistance from time-kill curves

Authors: Nerea Martínez-López Carlos Vilas Míriam R. García et al.

Contributors: Nerea Martínez-López Carlos Vilas Míriam R. García et al.

Source: Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)

Subject Terms: Antimicrobial Resistance (AMR), Model identifiability, Stochastic Processes, Maximum Likelihood Estimation (MLE), Stochastic Simulation Algorithm (SSA), Bacteria, Drug Resistance, Bacterial, AMR fitness cost, Humans, Microbial Sensitivity Tests, Models, Biological, Stochastic modelling, Anti-Bacterial Agents

Access URL: https://pubmed.ncbi.nlm.nih.gov/39182600
http://hdl.handle.net/10261/367434

Modeling and Simulating Chemical Reactions

Authors: Higham, Desmond J.

Source: SIAM Review, 2008 Jun 01. 50(2), 347-368.

Access URL: https://www.jstor.org/stable/20454108

Stochastic SIR Model Predicts the Evolution of COVID-19 Epidemics from Public Health and Wastewater Data in Small and Medium-Sized Municipalities: A One Year Study

Authors: Manuel Pájaro Noelia M. Fajar Antonio A. Alonso et al.

Contributors: Manuel Pájaro Noelia M. Fajar Antonio A. Alonso et al.

Source: Chaos Solitons Fractals
Digital.CSIC. Repositorio Institucional del CSIC
instname
Consejo Superior de Investigaciones Científicas (CSIC)

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Stochastic mechanistic model, Stochastic simulation algorithm, COVID-19, Chemical master equation, SIR model, SARS-coV-2, Article, 6. Clean water, 3. Good health

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/36091637
http://hdl.handle.net/10261/280695
https://hdl.handle.net/2183/32252

SiCaSMA: An Alternative Stochastic Description via Concatenation of Markov Processes for a Class of Catalytic Systems

Authors: Vincent Wagner Nicole Erika Radde

Source: Mathematics, Vol 9, Iss 1074, p 1074 (2021)

Subject Terms: chemical master equation, DNA methylation, catalytic systems, stochastic simulation algorithm, time-continuous Markov process, equivalence of stochastic processes, Mathematics, QA1-939

Relation: https://www.mdpi.com/2227-7390/9/10/1074; https://doaj.org/toc/2227-7390; https://doaj.org/article/982a4fe70885411984e1f54ce79c247d

Availability: https://doi.org/10.3390/math9101074
https://doaj.org/article/982a4fe70885411984e1f54ce79c247d

Hitting Times of Some Critical Events in RNA Origins of Life

Authors: Caleb Deen Bastian Hershel Rabitz

Source: Life, Vol 11, Iss 1419, p 1419 (2021)

Subject Terms: RNA world, stochastic simulation algorithm, random counting measure, measure-kernel-function, ordinary differential equation, high dimensional model representation, Science

Relation: https://www.mdpi.com/2075-1729/11/12/1419; https://doaj.org/toc/2075-1729; https://doaj.org/article/b2fd38c5a9e14a91ae5219d6aaaa3807

Availability: https://doi.org/10.3390/life11121419
https://doaj.org/article/b2fd38c5a9e14a91ae5219d6aaaa3807

Effects of Demographic Stochasticity on Population Persistence in Advective Media

Authors: Kolpas, Allison Nisbet, Roger M.

Source: Bulletin of Mathematical Biology: A Journal Devoted to Research at the Junction of Computational, Theoretical and Experimental Biology Official Journal of The Society for Mathematical Biology. 72(5)

Subject Terms: Mathematics, Cell Biology, Life Sciences, general, Mathematical Biology in General, Population dynamics, Drift paradox, Demographic stochasticity, Stochastic simulation algorithm

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/4nf3p6pp
https://escholarship.org/content/qt4nf3p6pp/qt4nf3p6pp.pdf

Gillespie’s Stochastic Simulation Algorithm on MIC coprocessors

Authors: TANGHERLONI, ANDREA NOBILE, MARCO SALVATORE Cazzaniga, P et al.

Source: The Journal of Supercomputing. 73:676-686

Subject Terms: GPU, HIGH-PERFORMANCE COMPUTING, MIC, PARALLEL COMPUTING, STOCHASTIC MODELING, STOCHASTIC SIMULATION ALGORITHM, GPU, High-Performance Computing, MIC, Parallel computing, Stochastic modeling, Stochastic Simulation Algorithm, 03 medical and health sciences, 0302 clinical medicine, 0206 medical engineering, 02 engineering and technology, Hardware and Architecture, Software, Information Systems, Theoretical Computer Science

File Description: application/pdf

Access URL: https://aisberg.unibg.it/bitstream/10446/73779/1/pact-si.pdf
https://link.springer.com/article/10.1007%2Fs11227-016-1778-8
https://dblp.uni-trier.de/db/journals/tjs/tjs73.html#TangherloniNCBM17
https://boa.unimib.it/handle/10281/130279
https://aisberg.unibg.it/handle/10446/73779
https://aisberg.unibg.it/bitstream/10446/73779/1/pact-si.pdf
http://dblp.uni-trier.de/db/journals/tjs/tjs73.html#TangherloniNCBM17
https://link.springer.com/article/10.1007/s11227-016-1778-8
https://doi.org/10.1007/s11227-016-1778-8
https://hdl.handle.net/11565/4058999