Suchergebnisse - "Similarity network"

Using similarity network analysis to improve text similarity calculations

Autoren: Witschard, Daniel Kucher, Kostiantyn Jusufi, Ilir et al.

Quelle: Rekryteringar 21 eLLIIT – The Linköping – Lund Initiative on IT and Mobile Communication Applied Network Science. 10(1)

Schlagwörter: Embeddings, Similarity networks, Text similarity calculations, Visual analytics, Network embeddings, Computational modelling, Item-based, Large datasets, Property, Similarity calculation, Similarity network, Text similarity, Text similarity calculation

Dateibeschreibung: electronic

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:bth-27685
https://doi.org/10.1007/s41109-025-00699-7

Analysis of Sequence Diversity in Subfamilies of Phytochrome-Linked Effectors

Autoren: Böhm, Cornelia Totaro, Massimo

Quelle: Methods in Molecular Biology ISBN: 9781071647905

Schlagwörter: visualisation, sequence alignment, bacteriophytochromes, network analysis, Sequence similarity network

PS3N: leveraging protein sequence-structure similarity for novel drug-drug interaction discovery

Autoren: Saminur Islam Ahmed Abbasi Nitin Agarwal et al.

Quelle: Scientific Reports, Vol 15, Iss 1, Pp 1-23 (2025)

Schlagwörter: Protien sequence structure similarity network (PS3N), Drug-drug interaction, Deep learning, Similarity network fusion, Medicine, Science

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2045-2322

Zugangs-URL: https://doaj.org/article/067b32b1c38444009d3efa40636b0c26

SimNetX: tinkering with patient similarity networks to understand biomedical data

Autoren: Tomas Anlauf Kristyna Kubikova Eliska Ochodkova et al.

Quelle: Applied Network Science, Vol 10, Iss 1, Pp 1-27 (2025)

Schlagwörter: Patient similarity network, Biomedical data, Data visualization, Applied mathematics. Quantitative methods, T57-57.97

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2364-8228

Zugangs-URL: https://doaj.org/article/72198c1a05b14923a47baa96654debca

Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity

Autoren: Ambikan, Anoop T. Yang, Hong Krishnan, Shuba et al.

Quelle: Cell systems. 13(8):665-681

Schlagwörter: COVID-19, similarity network fusion, personalized genome-scale metabolic model

Dateibeschreibung: print

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-209347
https://doi.org/10.1016/j.cels.2022.06.006

Integrative multiomics analysis reveals the subtypes and key mechanisms of platinum resistance in gastric cancer: identification of KLF9 as a promising therapeutic target

Autoren: Pengcheng Zhang Lexin Wang Haonan Lin et al.

Quelle: Journal of Translational Medicine, Vol 23, Iss 1, Pp 1-21 (2025)

Schlagwörter: Gastric cancer, Platinum resistance, Similarity network fusion, Spatial transcriptomics, KLF9, Medicine

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1479-5876

Zugangs-URL: https://doaj.org/article/8ef5c1bdf4ae47cfa06b56e8b57f70b9

Multinuclear non-haem iron-dependent oxidative enzymes: landscape of their substrates, partner proteins and biosynthetic gene clusters

Autoren: Antoine, R Leprevost, Laura Jünger, Sophie et al.

Weitere Verfasser: Antoine, R Leprevost, Laura Jünger, Sophie et al.

Quelle: Microbial Genomics. 11

Schlagwörter: [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], multinuclear non-haeme iron-dependent oxidative (MNIO) enzymes, genome mining, ribosomally synthesized post translationally modified peptides (RiPPs), [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], sequence similarity network (SSN) analysis, multinuclear non-haeme iron- dependent oxidative (MNIO) enzymes, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, biosynthetic gene clusters

Dateibeschreibung: application/pdf

Zugangs-URL: https://hal.science/hal-05244524v1/document
https://hal.science/hal-05244524v1
https://doi.org/10.1099/mgen.0.001462
https://hal.science/hal-05195384v1
https://doi.org/10.1099/mgen.0.001462
https://hal.science/hal-05195384v1/document

Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology

Autoren: Beiki, Hamid Murdoch, Brenda M Park, Carissa A et al.

Quelle: GigaScience. 13

Schlagwörter: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Biotechnology (rcdc), Genetics (rcdc), Human Genome (rcdc), Generic health relevance (hrcs-hc), Cattle (mesh), Animals (mesh), Gene Expression Profiling (mesh), Genomics (mesh), Sequence Analysis, RNA (mesh), Transcriptome (mesh), Quantitative Trait Loci (mesh), RNA (mesh), Protein Isoforms (mesh), Molecular Sequence Annotation (mesh), functional genomics, transcriptomics, epi-genetics, multi-omics integration, trait-similarity network, QTL, Animals (mesh), Cattle (mesh), Protein Isoforms (mesh), RNA (mesh), Gene Expression Profiling (mesh), Sequence Analysis, RNA (mesh), Genomics (mesh), Quantitative Trait Loci (mesh), Molecular Sequence Annotation (mesh), Transcriptome (mesh), QTL, epi-genetics, functional genomics, multi-omics integration, trait-similarity network, transcriptomics, Cattle (mesh), Animals (mesh), Gene Expression Profiling (mesh), Genomics (mesh), Sequence Analysis, RNA (mesh), Transcriptome (mesh), Quantitative Trait Loci (mesh), RNA (mesh), Protein Isoforms (mesh), Molecular Sequence Annotation (mesh)

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/1k66w6kz
https://escholarship.org/content/qt1k66w6kz/qt1k66w6kz.pdf

A Novel Assurance Procedure for Fair Data Augmentation in Machine Learning

Autoren: Samira Maghool Paolo Ceravolo Filippo Berto

Schlagwörter: Machine Learning, Fairness, Similarity Network, Data Augmentation

Dateibeschreibung: application/pdf

Zugangs-URL: https://ceur-ws.org/Vol-3948/paper3.pdf
https://hdl.handle.net/2434/1159100

Drug repositioning pipeline integrating community analysis in drug-drug similarity networks and automated ATC community labeling to foster molecular docking analysis

Autoren: Daiana Colibăşanu Vlad Groza Maria Antonietta Occhiuzzi et al.

Quelle: Frontiers in Bioinformatics, Vol 5 (2025)

Schlagwörter: drug repositioning, drug-disease network, drug-drug similarity network, ATC labeling, molecular docking, Computer applications to medicine. Medical informatics, R858-859.7

Dateibeschreibung: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbinf.2025.1666716/full; https://doaj.org/toc/2673-7647

Zugangs-URL: https://doaj.org/article/c1cf44470b8149969e89a9084ea1f01a

Host-similar fragments in the African swine fever virus genome: distribution, functions, and evolution

Autoren: Zhaozhong Zhu Na Li Qin Sun et al.

Quelle: Veterinary Research, Vol 56, Iss 1, Pp 1-11 (2025)

Schlagwörter: African swine fever virus, host-similar fragments, similarity network, evolution, recombination, Veterinary medicine, SF600-1100

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1297-9716

Zugangs-URL: https://doaj.org/article/fc6a16b078d245c396ce4c3f90c0b514

Periplasmic binding proteins Bug69 and Bug27 from Bordetella pertussis are in vitro high‐affinity quinolinate binders with a potential role in NAD biosynthesis

Autoren: Leonardo Sorci Gabriele Minazzato Adolfo Amici et al.

Quelle: FEBS Open Bio
FEBS Open Bio, Vol 14, Iss 10, Pp 1718-1730 (2024)

Schlagwörter: 0301 basic medicine, 0303 health sciences, QH301-705.5, quinolinate phosphoribosyltransferase, NAD biosynthesis, Bordetella Uptake Gene, molecular docking, NAD, Bordetella pertussis, Molecular Docking Simulation, 03 medical and health sciences, Bacterial Proteins, Periplasmic Binding Proteins, periplasmic binding protein, Pentosyltransferases, Biology (General), sequence similarity network, Research Article

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39118291
https://doaj.org/article/bfe352256eee4433acde49ec371ea3cd

Association prediction of lncRNAs and diseases using multiview graph convolution neural network

Autoren: Wei Zhang Yifu Zeng Xiaowen Xiang et al.

Quelle: Front Genet
Frontiers in Genetics, Vol 16 (2025)

Schlagwörter: similarity network, graph convolutional network, multiview data, Genetics, deep learning, QH426-470, lncRNA-miRNA

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/40303981
https://doaj.org/article/c73d1805d04549b5bebdb113672edd52

Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes

Autoren: Monjot, Arthur Rousseau, Jérémy Bittner, Lucie et al.

Weitere Verfasser: Monjot, Arthur Rousseau, Jérémy Bittner, Lucie et al.

Quelle: Microbiome
Microbiome, Vol 13, Iss 1, Pp 1-18 (2025)

Schlagwörter: [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Research, QR100-130, Freshwater ecosystems, Fungi, Fresh-water, Eukaryota, Fresh Water, Functional diversity, Microbial eukaryotes, Lake, [SDE.BE] Environmental Sciences/Biodiversity and Ecology, Microbial ecology, Lakes, [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Parasites, France, Metatranscriptomic, Transcriptome, [SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology, Micro-eukaryotes, Ecosystem, [SDV.BID] Life Sciences [q-bio]/Biodiversity, Metatranscriptomics, Sequence similarity network

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39915863
https://doaj.org/article/e92f616cf3084da1a7131002c53a7d9a
https://hal.science/hal-05006807v1

Trait-based approach coupled to metatranscriptomic-derived sequence similarity network: towards the depiction of the functional diversity of freshwater microbial eukaryotes

Autoren: Monjot, Arthur Bronner, Gisèle Courtine, Damien et al.

Weitere Verfasser: Monjot, Arthur Bronner, Gisèle Courtine, Damien et al.

Schlagwörter: [SDV] Life Sciences [q-bio], [SDV.EE] Life Sciences [q-bio]/Ecology, environment, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Trait-based approach, Freshwater ecosystems, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, Environmental genomic, Microbial eukaryotes, [SDV.BC] Life Sciences [q-bio]/Cellular Biology, Sequence similarity network, [SDV.BID] Life Sciences [q-bio]/Biodiversity

Zugangs-URL: https://hal.science/hal-05134808v1

Neuromorphic deviations associated with transcriptomic expression and specific cell type in Alzheimer’s disease

Autoren: Jinzhong Peng Qin Tang Yilu Li et al.

Quelle: Scientific Reports, Vol 15, Iss 1, Pp 1-11 (2025)

Schlagwörter: Alzheimer’s disease, Cognitive decline, Cell types, Morphometric similarity network, Gene expression, Medicine, Science

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2045-2322

Zugangs-URL: https://doaj.org/article/9fb2aec58bd04670ad450d2fdd70946a

Genomic diversity and comparative phylogenomic analysis of genus Norovirus

Autoren: Huijeong Doh Changhyeon Lee Nam Yee Kim et al.

Quelle: Scientific Reports, Vol 15, Iss 1, Pp 1-14 (2025)

Schlagwörter: Norovirus, Selection pressure, Phylogenomics, Sequence similarity network, Medicine, Science

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2045-2322

Zugangs-URL: https://doaj.org/article/478cf2f2184c4876a75f7ad6fefc3801

Shared and distinct morphometric similarity network abnormalities in generalized anxiety disorder, posttraumatic stress disorder and social anxiety disorder

Autoren: Guifeng Tan Minlan Yuan Lun Li et al.

Quelle: BMC Psychiatry, Vol 25, Iss 1, Pp 1-10 (2025)

Schlagwörter: Generalized anxiety disorder, Morphometric similarity network, Posttraumatic stress disorder, Social anxiety disorder, Psychiatry, RC435-571

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1471-244X

Zugangs-URL: https://doaj.org/article/05207a7c46214556befec9c77c17e6b4

Fine-grained classification of journal articles based on multiple layers of information through similarity network fusion: The case of the Cambridge Journal of Economics

Autoren: Baccini, Alberto Baccini, Federica Barabesi, Lucio et al.

Weitere Verfasser: Baccini, Alberto Baccini, Federica Barabesi, Lucio et al.

Quelle: Scientometrics. 129:373-400

Schlagwörter: FOS: Computer and information sciences, Generalized distance correlation,· Partial distance correlation,· Multilayer social networks,· Communities in networks,· Topic modeling, Similarity network fusion, Generalized distance correlation,· Partial distance correlation,· Multilayer social networks,· Communities in networks,· Topic modeling, Similarity network fusion, Generalized distance correlation, Partial distance correlation, Multilayer social networks, Communities in networks, Topic modeling, Computer Science - Digital Libraries, Digital Libraries (cs.DL), similarity network fusion, generalized distance correlation, partial distance correlation, multilayer social networks, communities in networks, topic modeling

Dateibeschreibung: application/pdf; ELETTRONICO

Zugangs-URL: http://arxiv.org/abs/2305.00026
https://hdl.handle.net/11365/1252594
https://doi.org/10.1007/s11192-023-04884-2
https://link.springer.com/article/10.1007/s11192-023-04884-2

Cortical Morphometric Similarity Remodeling in Traumatic Brain Injury Links Cognitive Impairments with Transcriptional Changes and Type‐Specific Cells

Autoren: Yizhen Pan Zhuonan Wang Xiang Zhang et al.

Quelle: Adv Sci (Weinh)
Advanced Science, Vol 12, Iss 13, Pp n/a-n/a (2025)

Schlagwörter: Male, Adult, Cerebral Cortex, Adolescent, traumatic brain injury, Science, cortical structural abnormality, Middle Aged, Young Adult, Brain Injuries, Traumatic, morphometric similarity network, cells, Humans, Female, Cognitive Dysfunction, transcription, Transcriptome, Child, Brain Concussion, Research Article

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39921308
https://doaj.org/article/597ae3033230458d9f62a49b57dcdaf4