Search Results - "Reproducible Data Analysis"

Awareness in Data Management and Analysis for Industry and Research

Authors: Vandendorpe, Justine orcid:0000-0002-9421- Fuerst, Julia et al.

Contributors: Vandendorpe, Justine orcid:0000-0002-9421- Fuerst, Julia et al.

Subject Terms: Research Data Management, Common European Data Spaces, Data Management, Data Governance and Industry, Data Management Plans, Data Organisation, FAIR Data Principles, Electronic Lab Notebooks, Reproducible Data Analysis, BioNT

Relation: https://zenodo.org/records/10813869; oai:zenodo.org:10813869; https://doi.org/10.5281/zenodo.10813869

Availability: https://doi.org/10.5281/zenodo.10813869
https://zenodo.org/records/10813869

Cogito: automated and generic comparison of annotated genomic intervals

Authors: Annika Bürger Martin Dugas

Source: BMC Bioinformatics, Vol 23, Iss 1, Pp 1-16 (2022)

Subject Terms: Correlation, Statistics, Genomic interval, Reproducible data analysis, Data integration, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/e14e18fceebc43a4a451b7daeb5f136c

Enhancing RDM in Galaxy by integrating RO-Crate

Authors: De Geest, Paul Coppens, Frederik Soiland-Reyes, Stian et al.

Source: Research Ideas and Outcomes, Vol 8, Iss, Pp 1-4 (2022)
De Geest, P, Coppens, F, Soiland-reyes, S, Eguinoa, I & Leo, S 2022, 'Enhancing RDM in Galaxy by integrating RO-Crate', Research Ideas and Outcomes, vol. 8, e95164. https://doi.org/10.3897/rio.8.e95164
Research Ideas and Outcomes 8: e95164
Research Ideas and Outcomes

Subject Terms: exchange format, 0301 basic medicine, FAIR digital object, workflow, Science, 0206 medical engineering, 02 engineering and technology, reproducible data analysis, 03 medical and health sciences, packaging format, metadata description, FAIR, pa

File Description: text/html

Access URL: https://doaj.org/article/24485ff205c645869f0681bef7e0ddae
https://research.manchester.ac.uk/en/publications/b0945414-b670-4272-80ac-849f52e286df
https://doi.org/10.3897/rio.8.e95164
https://research.manchester.ac.uk/en/publications/b0945414-b670-4272-80ac-849f52e286df
https://doi.org/10.5281/zenodo.7257146
https://doi.org/10.3897/rio.8.e95164
https://riojournal.com/article/95164/
https://riojournal.com/article/95164/download/pdf/
https://doi.org/10.3897/rio.8.e95164

Cogito: automated and generic comparison of annotated genomic intervals

Authors: Bürger, A. (Annika) Dugas, M. (Martin) Universitäts- und Landesbibliothek Münster

Contributors: Bürger, A. (Annika) Dugas, M. (Martin) Universitäts- und Landesbibliothek Münster

Subject Terms: Correlation, Statistics, Genomic interval, Reproducible data analysis, Data integration, ddc:610, info:eu-repo/classification/ddc/610, Medicine and health

File Description: application/pdf

Relation: info:eu-repo/semantics/reference/url/https://static-content.springer.com/esm/art%3A10.1186%2Fs12859-022-04853-1/MediaObjects/12859_2022_4853_MOESM1_ESM.pdf; info:eu-repo/semantics/reference/url/https://static-content.springer.com/esm/art%3A10.1186%2Fs12859-022-04853-1/MediaObjects/12859_2022_4853_MOESM2_ESM.pdf

Availability: https://nbn-resolving.org/urn:nbn:de:hbz:6-48988611808
https://doi.org/10.17879/58988618656
https://miami.uni-muenster.de/Record/5677a917-5e8e-4de9-a86c-379977d299e9
https://repositorium.uni-muenster.de/transfer/miami/5677a917-5e8e-4de9-a86c-379977d299e9

CWL-Airflow

Authors: Michael Kotliar orcid:0000-0002-6486- Andrey Kartashov et al.

Subject Terms: cwl-airflow, workflow, cwl, common-workflow-language, containers, dag, cwl-descriptor, commonwl, workflow manager, pipeline manager, Airflow, reproducible data analysis, workflow portability

Relation: https://github.com/Barski-lab/cwl-airflow/tree/1.0.15; https://zenodo.org/records/2669582; oai:zenodo.org:2669582; https://doi.org/10.5281/zenodo.2669582

Availability: https://doi.org/10.5281/zenodo.2669582
https://zenodo.org/records/2669582

CWL-Airflow: developmental release

Authors: Michael Kotliar orcid:0000-0002-6486- Andrey Kartashov et al.

Subject Terms: cwl-airflow, workflow, cwl, common-workflow-language, containers, dag, cwl-descriptor, commonwl, workflow manager, pipeline manager, Airflow, reproducible data analysis, workflow portability, docker

Relation: https://github.com/Barski-lab/cwl-airflow/tree/1.1.dev0; https://zenodo.org/records/3265210; oai:zenodo.org:3265210; https://doi.org/10.5281/zenodo.3265210

Availability: https://doi.org/10.5281/zenodo.3265210
https://zenodo.org/records/3265210

ProjectSVR: mapping single-cell RNA-seq data to reference atlases by supported vector regression.

Authors: Gao J Fang J Zhu Q et al.

Source: Briefings in bioinformatics [Brief Bioinform] 2025 Nov 01; Vol. 26 (6).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH Terms: Single-Cell Analysis*/methods , RNA-Seq*/methods , Support Vector Machine* , Sequence Analysis, RNA*/methods , Software*, Humans ; Computational Biology/methods ; Algorithms ; Single-Cell Gene Expression Analysis

Non-Disposable Assignments for Remote Neuroscience Laboratory Teaching Using Analysis of Human Data.

Authors: Seraphin SB Stock S

Source: Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience [J Undergrad Neurosci Educ] 2020 Dec 31; Vol. 19 (1), pp. A105-A112. Date of Electronic Publication: 2020 Dec 31 (Print Publication: 2020).

Publication Type: Journal Article

Journal Info: Publisher: Faculty for Undergraduate Neuroscience Country of Publication: United States NLM ID: 101229224 Publication Model: eCollection Cited Medium: Print ISSN: 1544-2896 (Print) Linking ISSN: 15442896 NLM ISO Abbreviation: J Undergrad Neurosci Educ Subsets: PubMed not MEDLINE

Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis.

Authors: Chong J Wishart DS Xia J

Source: Current protocols in bioinformatics [Curr Protoc Bioinformatics] 2019 Dec; Vol. 68 (1), pp. e86.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Country of Publication: United States NLM ID: 101157830 Publication Model: Print Cited Medium: Internet ISSN: 1934-340X (Electronic) Linking ISSN: 19343396 NLM ISO Abbreviation: Curr Protoc Bioinformatics Subsets: MEDLINE

MeSH Terms: Software*, Computational Biology/*methods , Metabolomics/*methods, Biomarkers ; Databases, Factual ; Humans ; Internet ; Metabolome ; Principal Component Analysis ; User-Computer Interface

CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language.

Authors: Kotliar M Kartashov AV Barski A

Source: GigaScience [Gigascience] 2019 Jul 01; Vol. 8 (7).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN: 2047-217X (Electronic) Linking ISSN: 2047217X NLM ISO Abbreviation: Gigascience Subsets: MEDLINE

MeSH Terms: Software* , Workflow*, Chromatin Immunoprecipitation Sequencing/*methods , Genomics/*methods, Animals ; Big Data ; Humans