Suchergebnisse - "RNA sequencing"

Co-expression of LncRNA and mRNA in the cumulus-oocyte complex of rabbits exposed to ammonia.

Autoren: Cui, Jia Wu, Fengyang Yang, Xinyu et al.

Quelle: BMC Veterinary Research. 6/2/2025, Vol. 21 Issue 1, p1-14. 14p.

Schlagworte: LincRNA, RNA sequencing, Cytology, Messenger RNA, Pollutants

Novel experimental strategies to characterize the genomic architecture of monogenic autoinflammatory diseases: from characterization of aberrant mRNA transcripts to elucidation of the role of post-zygotic variants in desease pathogenesis

Autoren: Bonet Martín, Núria

Weitere Verfasser: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Casals López, Ferran, Aróstegui Gorospe, Juan Ignacio

Quelle: TDX (Tesis Doctorals en Xarxa)

Schlagwörter: Malalties autoinflamatòries, Anàlisi genòmica, Seqüenciació ARN, Mosaicisme, Noves tecnologies de seqüenciació, Autoinflammatory diseases, Genomic analysis, RNA sequencing, Mosaicism, New sequencing technologies

Dateibeschreibung: application/pdf

Zugangs-URL: http://hdl.handle.net/10803/693691

Anticancer effects and mechanisms of Pulsatilla chinensis, Bupleurum chinense and Polyporus umbellatus on human lung carcinoma and hepatoma cells

Autoren: Li, Mengzhen Kim, Woonghee Jin, Han et al.

Quelle: Computational and Structural Biotechnology Journal. 27:3066-3078

Schlagwörter: Traditional Chinese medicine, Herbal extract, Liver cancer, Lung cancer, Cancer therapeutics, RNA sequencing, Bioinformatic analysis

Dateibeschreibung: print

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-371842
https://doi.org/10.1016/j.csbj.2025.07.023

Effects of Oligolysine-Polyethylene Glycol Coating on the Biodistribution of Wireframe DNA Origami Nanosheets in Zebrafish Embryos

Autoren: Kolonelou, Christina Engström, Enya Bräutigam, Lars et al.

Quelle: ACS Nano. 19(36):32145-32157

Schlagwörter: biodistribution, DNA origami, light sheet fluorescence microscopy, single-cell RNA sequencing, zebrafish

Dateibeschreibung: print

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-370397
https://doi.org/10.1021/acsnano.5c05801

Stromal Expression Profiling Reveals Immune‐Driven Adaption to Malignancy in Canine Melanoma Subtypes.

Autoren: Beebe, Erin Krudewig, Christiane Motamed, Zahra et al.

Quelle: Veterinary & Comparative Oncology. Mar2025, Vol. 23 Issue 1, p20-29. 10p.

Schlagworte: Immune checkpoint proteins, RNA sequencing, Prognosis, Melanoma, CD20 antigen, Oral mucosa

Design and implementation of a next-generation sequencing test for the fast and cost-effective SARS-CoV-2 differantial diagnosis and variant detection

Autoren: Montero Vale, María Mercedes

Weitere Verfasser: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Rodríguez Lumbiarres, Jairo, González Ruiz, Juan Ramón

Quelle: TDX (Tesis Doctorals en Xarxa)

Schlagwörter: Pandemic, SARS-CoV-2, NGS, RNA sequencing, Differential diagnosis, Respiratory viruses, Pandemia, Diagnóstico diferencial, Virus respiratorios

Dateibeschreibung: application/pdf

Zugangs-URL: http://hdl.handle.net/10803/692226

Exploring the pathogenesis of rare disorders: novel approaches from genomics to transcriptomics

Autoren: Moreno Ruiz, Nerea

Weitere Verfasser: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Casals López, Ferran, Laayouni, Hafid

Quelle: TDX (Tesis Doctorals en Xarxa)

Schlagwörter: Digenic inheritance, Whole-Genome sequencing, RNA sequencing, Rare disorders, Genetic diagnosis, Herencia digénica, Secuenciación de genoma completo, Secuenciación de RNA, Enfermedades raras, Diagnóstico genético

Dateibeschreibung: application/pdf

Zugangs-URL: http://hdl.handle.net/10803/691532

scVGAMF: a novel imputation method for scRNA-seq data by integrating linear and non-linear features Open Access.

Autoren: Zhou, Zhiyuan Zhang, Wei Zheng, Xiaoying et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-12. 12p.

Schlagwörter: *ESTIMATION theory, GENE expression, RNA sequencing, MATRIX decomposition, CELL populations, NONLINEAR dynamical systems

How far are we from the era of big data in transcriptomics? Lessons from the bacterial data in GEO Open Access.

Autoren: Escobedo-Muñoz, A S Carmona-Campos, Diego Trapaga, Armando G G et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-16. 16p.

Schlagwörter: *BIG data, RNA sequencing, BACTERIOLOGY, TRANSCRIPTOMES, DATA integration, FUNCTIONAL genomics, DNA microarrays

A transcriptional plasticity-aware framework for RNA-seq differential expression analysis Open Access.

Autoren: Bei, Cheng Wang, Xiaoman Gan, Mingyu et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-10. 10p.

Schlagwörter: RNA sequencing, GENE expression, GENETIC transcription regulation, BIOINFORMATICS, MYCOBACTERIUM tuberculosis, STATISTICAL smoothing

Network based simultaneous embedding of cells and marker genes from scRNA-seq studies Open Access.

Autoren: Bhattacharya, Namrata Chakraborti, Swagatam Kumari, Stuti et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-12. 12p.

Schlagwörter: *ALGORITHMS, VISUALIZATION, RNA sequencing, BIOMARKERS, DIMENSIONAL reduction algorithms

Novel methods for temporally varying gene identification in longitudinal studies reveal bleeding and clotting pathway activation caused by blood draws Open Access.

Autoren: Chen, Wei Chai, Yi Jiang, Qi et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-10. 10p.

Schlagwörter: GENE expression, RNA sequencing, GENE expression profiling, LONGITUDINAL method, SYSTEMS biology, BIOINFORMATICS, GENETIC regulation

Numbat-multiome: inferring copy number variations by combining RNA and chromatin accessibility information from single-cell data Open Access.

Autoren: Li, Ruitong Alberge, Jean-Baptiste Keshavarzian, Tina et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-13. 13p.

Schlagwörter: DNA copy number variations, RNA sequencing, CHROMATIN, EPIGENOMICS, TUMORS, CLONE cells, BIOINFORMATICS software

scHSC: enhancing single-cell RNA-seq clustering via hard sample contrastive learning Open Access.

Autoren: Fang, Sheng Yu, Xiaokang Xu, Xinyi et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-11. 11p.

Schlagwörter: *ZERO-inflated probability distribution, DEEP learning, RNA sequencing, CLUSTERING algorithms, MACHINE learning, GENE expression

scSorterDL: a deep neural network-enhanced ensemble LDAs for single cell classifications Open Access.

Autoren: Bai, Kailun Moa, Belaid Shao, Xiaojian et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-10. 10p.

Schlagwörter: *ARTIFICIAL neural networks, RNA sequencing, MISSING data (Statistics), FISHER discriminant analysis, CELLULAR recognition, SWARM intelligence, CELL determination

SLRanger: an integrated approach for spliced leader detection and operon prediction using long RNA reads Open Access.

Autoren: Shao, Yanwen Guo, Zhihao Chen, Jinpeng et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-9. 9p.

Schlagwörter: *DATA mining, RNA sequencing, OPERONS, TRANSCRIPTOMES, ALTERNATIVE RNA splicing, RNA, CAENORHABDITIS elegans

Deep clustering of single-cell RNA-seq using adversarial graph contrastive learning Open Access.

Autoren: Vinh, Le Van Quang, Tran Nhat Hiep, Lai Hoang et al.

Quelle: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-10. 10p.

Schlagwörter: RNA sequencing, CLUSTERING algorithms, REPRESENTATIONS of graphs, BIOMARKERS, CELLULAR recognition, GRAPH neural networks, MACHINE learning, TRANSCRIPTOMES

A comparative evaluation of computational models for RNA modification detection using nanopore sequencing with RNA004 chemistry Open Access.

Autoren: Zou, Yongji Ahsan, Mian Umair Chan, Joe et al.

Quelle: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-11. 11p.

Schlagwörter: *ALGORITHMS, RNA sequencing, RNA modification & restriction, PREDICTION models, NANOPORES

Benchmarking of computational demultiplexing methods for single-nucleus RNA sequencing data Open Access.

Autoren: Fu, Yile Youness, Mohamad Virzì, Alessia et al.

Quelle: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-16. 16p.

Schlagwörter: *MULTIPLEXING, DEMULTIPLEXING, RNA sequencing, BENCHMARK problems (Computer science), GENETIC variation, EVALUATION methodology

Applications and techniques of single-cell RNA sequencing across diverse species Open Access.

Autoren: Woo, Hyunmin Eyun, Seong-il

Quelle: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-18. 18p.

Schlagwörter: ONCOLOGY, RNA sequencing, ECOLOGICAL genetics, DEVELOPMENTAL biology, SPECIES diversity, TRANSCRIPTOMES