Výsledky vyhľadávania - "Protein Structure, Secondary"

DCBLSTM-Deep Convolutional Bidirectional Long Short-Term Memory neural network for Q8 secondary protein structure prediction.

Autori: Banthia S McKenna A Tiwari SK a ďalší

Zdroj: Computers in biology and medicine [Comput Biol Med] 2025 Sep; Vol. 195, pp. 110457. Date of Electronic Publication: 2025 Jun 23.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Neural Networks, Computer* , Protein Structure, Secondary* , Computational Biology*/methods, Databases, Protein ; Humans

Combining knowledge distillation and neural networks to predict protein secondary structure.

Autori: Zhao L Li J Zhang B a ďalší

Zdroj: Scientific reports [Sci Rep] 2025 Aug 31; Vol. 15 (1), pp. 32031. Date of Electronic Publication: 2025 Aug 31.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

Výrazy zo slovníka MeSH: Neural Networks, Computer* , Proteins*/chemistry , Protein Structure, Secondary*, Deep Learning ; Databases, Protein ; Computational Biology/methods

TransConv: convolution-infused transformer for protein secondary structure prediction.

Autori: Das S Ghosh S Jana ND

Zdroj: Journal of molecular modeling [J Mol Model] 2025 Jan 08; Vol. 31 (2), pp. 37. Date of Electronic Publication: 2025 Jan 08.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Springer Country of Publication: Germany NLM ID: 9806569 Publication Model: Electronic Cited Medium: Internet ISSN: 0948-5023 (Electronic) Linking ISSN: 09485023 NLM ISO Abbreviation: J Mol Model Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Protein Structure, Secondary* , Computational Biology*/methods, Algorithms ; Models, Molecular ; Hydrogen Bonding ; Databases, Protein ; Amino Acid Sequence

A comprehensive guide for secondary structure and tertiary structure determination in peptides and proteins by circular dichroism spectrometer.

Autori: Kuril AK Vashi A Subbappa PK

Zdroj: Journal of peptide science : an official publication of the European Peptide Society [J Pept Sci] 2025 Jan; Vol. 31 (1), pp. e3648. Date of Electronic Publication: 2024 Aug 12.

Spôsob vydávania: Journal Article; Review

Informácie o časopise: Publisher: John Wiley & Sons Country of Publication: England NLM ID: 9506309 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1099-1387 (Electronic) Linking ISSN: 10752617 NLM ISO Abbreviation: J Pept Sci Subsets: MEDLINE

Výrazy zo slovníka MeSH: Circular Dichroism*/methods , Peptides*/chemistry , Protein Structure, Secondary* , Protein Structure, Tertiary* , Proteins*/chemistry

Hierarchical Analysis of Protein Structures: From Secondary Structures to Protein Units and Domains.

Autori: Perin C Cretin G Gelly JC

Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2870, pp. 357-370.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Protein Structure, Secondary* , Protein Domains*, Protein Folding ; Databases, Protein ; Models, Molecular ; Computational Biology/methods ; Protein Conformation

Recent Advances in Computational Prediction of Secondary and Supersecondary Structures from Protein Sequences.

Autori: Zhang J Qian J Zou Q a ďalší

Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2870, pp. 1-19.

Spôsob vydávania: Journal Article; Review

Informácie o časopise: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Computational Biology*/methods , Protein Structure, Secondary*, Software ; Databases, Protein ; Amino Acid Sequence ; Machine Learning ; Sequence Analysis, Protein/methods ; Neural Networks, Computer

Secondary Structure in Free and Assisted Modeling of Proteins with the Coarse-Grained UNRES Force Field.

Autori: Lubecka EA Czaplewski C Sieradzan AK a ďalší

Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2867, pp. 19-41.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Thermodynamics* , Protein Structure, Secondary* , Molecular Dynamics Simulation*, Computational Biology/methods ; Models, Molecular

Strategy for improving circular dichroism spectra deconvolution accuracy for macrocyclic peptides in drug discovery.

Autori: Guo W Makarov AA Buevich AV a ďalší

Zdroj: Journal of pharmaceutical and biomedical analysis [J Pharm Biomed Anal] 2025 Jan 01; Vol. 252, pp. 116476. Date of Electronic Publication: 2024 Sep 16.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Science Country of Publication: England NLM ID: 8309336 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-264X (Electronic) Linking ISSN: 07317085 NLM ISO Abbreviation: J Pharm Biomed Anal Subsets: MEDLINE

Výrazy zo slovníka MeSH: Circular Dichroism*/methods , Drug Discovery*/methods , Peptides, Cyclic*/chemistry , Protein Structure, Secondary*, Calibration ; Magnetic Resonance Spectroscopy/methods ; Crystallography, X-Ray/methods

Improving Protein Secondary Structure Prediction by Deep Language Models and Transformer Networks.

Autori: Wu T Cheng W Cheng J

Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2867, pp. 43-53.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Protein Structure, Secondary* , Computational Biology*/methods, Deep Learning ; Software ; Databases, Protein ; Sequence Alignment/methods ; Algorithms ; Amino Acid Sequence

Importance of Secondary Structure Data in Large Scale Protein Modeling Using Low-Resolution SURPASS Method.

Autori: Badaczewska-Dawid AE Kolinski A

Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2867, pp. 55-78.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Protein Structure, Secondary*, Monte Carlo Method ; Protein Folding ; Models, Molecular ; Computational Biology/methods ; Molecular Dynamics Simulation ; Algorithms ; Protein Conformation

dRama: Differential Ramachandran Plot as a Tool to Analyze Subtle Changes in Protein Secondary Structure.

Autori: Batys P Krzemień L Barbasz J

Zdroj: Proteomics. Clinical applications [Proteomics Clin Appl] 2025 Jan; Vol. 19 (1), pp. e202400087. Date of Electronic Publication: 2024 Nov 24.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Wiley-VCH Country of Publication: Germany NLM ID: 101298608 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1862-8354 (Electronic) Linking ISSN: 18628346 NLM ISO Abbreviation: Proteomics Clin Appl Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Protein Structure, Secondary* , Software*, Molecular Dynamics Simulation

Protein Secondary Structure and DNA/RNA Detection for Cryo-EM and Cryo-ET Using Emap2sec and Emap2sec ^.

Autori: Baghirov J Zhu H Wang X a ďalší

Zdroj: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2025; Vol. 2867, pp. 105-120.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Cryoelectron Microscopy*/methods , Software* , RNA*/chemistry , DNA*/chemistry , Protein Structure, Secondary*, Proteins/chemistry ; Models, Molecular ; Nucleic Acid Conformation

Effects of chlorine dioxide oxidation on the structure and gel functionality of crayfish myofibrillar protein.

Autori: Mao S Luo X Chen Y a ďalší

Zdroj: Food chemistry [Food Chem] 2025 Dec 30; Vol. 497, pp. 146976. Date of Electronic Publication: 2025 Nov 05.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Applied Science Publishers Country of Publication: England NLM ID: 7702639 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-7072 (Electronic) Linking ISSN: 03088146 NLM ISO Abbreviation: Food Chem Subsets: MEDLINE

Výrazy zo slovníka MeSH: Astacoidea*/chemistry , Chlorine Compounds*/chemistry , Chlorine Compounds*/pharmacology , Oxides*/chemistry , Oxides*/pharmacology , Muscle Proteins*/chemistry , Myofibrils*/chemistry , Arthropod Proteins*/chemistry, Animals ; Oxidation-Reduction ; Gels/chemistry ; Hydrophobic and Hydrophilic Interactions ; Protein Structure, Secondary

Enhanced characterization of protein secondary structure transitions using Raman and SERS measurements combined with 2D correlation spectroscopy and principal component analysis.

Autori: Mesias VSD Zhang J Fu W a ďalší

Zdroj: Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy [Spectrochim Acta A Mol Biomol Spectrosc] 2025 Dec 15; Vol. 343, pp. 126607. Date of Electronic Publication: 2025 Jun 24.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: England NLM ID: 9602533 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-3557 (Electronic) Linking ISSN: 13861425 NLM ISO Abbreviation: Spectrochim Acta A Mol Biomol Spectrosc Subsets: MEDLINE

Výrazy zo slovníka MeSH: Spectrum Analysis, Raman*/methods , Proteins*/chemistry, Principal Component Analysis ; Protein Structure, Secondary ; Hydrogen Bonding ; Peptides/chemistry

Polymorphism on the interfacial adhesion of amyloid-like fibrils: insights from assembly units and secondary structures.

Autori: Guo X Wen B Liu W a ďalší

Zdroj: Journal of colloid and interface science [J Colloid Interface Sci] 2025 Dec 15; Vol. 700 (Pt 1), pp. 138375. Date of Electronic Publication: 2025 Jul 07.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Academic Press Country of Publication: United States NLM ID: 0043125 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-7103 (Electronic) Linking ISSN: 00219797 NLM ISO Abbreviation: J Colloid Interface Sci Subsets: MEDLINE

Výrazy zo slovníka MeSH: Amyloid*/chemistry , Muramidase*/chemistry , Muramidase*/metabolism , Peptide Fragments*/chemistry, Protein Structure, Secondary ; Surface Properties ; Hydrophobic and Hydrophilic Interactions

Glycation-mediated binding defect in human serum albumin transport of erdosteine: implications in diabetes.

Autori: Al-Atawi NMD Al-Harbi OMA Al-Finaikh RSM a ďalší

Zdroj: Cellular and molecular biology (Noisy-le-Grand, France) [Cell Mol Biol (Noisy-le-grand)] 2025 Dec 06; Vol. 71 (11), pp. 45-52. Date of Electronic Publication: 2025 Dec 06.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: C.M.B. Association Country of Publication: France NLM ID: 9216789 Publication Model: Electronic Cited Medium: Internet ISSN: 1165-158X (Electronic) Linking ISSN: 01455680 NLM ISO Abbreviation: Cell Mol Biol (Noisy-le-grand) Subsets: MEDLINE

Výrazy zo slovníka MeSH: Thioglycolates*/metabolism , Thioglycolates*/chemistry , Serum Albumin, Human*/metabolism , Serum Albumin, Human*/chemistry , Thiophenes*/metabolism , Thiophenes*/chemistry , Diabetes Mellitus*/metabolism , Serum Albumin*/metabolism , Serum Albumin*/chemistry, Humans ; Molecular Dynamics Simulation ; Molecular Docking Simulation ; Protein Binding ; Hydrogen Bonding ; Binding Sites ; Glucose/metabolism ; Glycosylation ; Biological Transport ; Protein Structure, Secondary

Impact of Strand Edge N-Amination on the Stability of a Parallel β-Hairpin Fold.

Autori: Starnes SK Horne WS Del Valle JR

Zdroj: The Journal of organic chemistry [J Org Chem] 2025 Dec 05; Vol. 90 (48), pp. 17214-17220. Date of Electronic Publication: 2025 Nov 20.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: American Chemical Society Country of Publication: United States NLM ID: 2985193R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-6904 (Electronic) Linking ISSN: 00223263 NLM ISO Abbreviation: J Org Chem Subsets: MEDLINE

Výrazy zo slovníka MeSH: Peptides*/chemistry, Amination ; Protein Folding ; Hydrogen Bonding ; Models, Molecular ; Protein Conformation, beta-Strand ; Circular Dichroism ; Protein Structure, Secondary ; Magnetic Resonance Spectroscopy

Improvement of Protein Structure Modeling Upon Coarse Grained Force Field Augmentation with Multitorsional Potentials Demonstrates the Significance of Along-Chain Coupling of Local Conformational States in Protein Folding.

Autori: Petrusevich EF Liwo A

Zdroj: The journal of physical chemistry. B [J Phys Chem B] 2025 Dec 04; Vol. 129 (48), pp. 12443-12459. Date of Electronic Publication: 2025 Nov 22.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101157530 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5207 (Electronic) Linking ISSN: 15205207 NLM ISO Abbreviation: J Phys Chem B Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry, Protein Folding ; Protein Conformation ; Models, Molecular ; Protein Structure, Secondary ; Molecular Dynamics Simulation

Programmable Helicity and Macrocycle Symmetry in β-Peptides via Site-Selective Thioamide Substitution.

Autori: Hong J Kim J Gong J a ďalší

Zdroj: Journal of the American Chemical Society [J Am Chem Soc] 2025 Dec 03; Vol. 147 (48), pp. 44216-44224. Date of Electronic Publication: 2025 Oct 29.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: American Chemical Society Country of Publication: United States NLM ID: 7503056 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5126 (Electronic) Linking ISSN: 00027863 NLM ISO Abbreviation: J Am Chem Soc Subsets: MEDLINE

Výrazy zo slovníka MeSH: Thioamides*/chemistry , Peptides*/chemistry , Peptides*/chemical synthesis , Macrocyclic Compounds*/chemistry, Protein Structure, Secondary ; Models, Molecular

Membrane binding of a cyanobacterial ESCRT-III protein crucially involves the helix α1-3 hairpin conserved in all superfamily members.

Autori: Schlösser L Kutzner M Hellmann N a ďalší

Zdroj: Protein science : a publication of the Protein Society [Protein Sci] 2025 Dec; Vol. 34 (12), pp. e70387.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9211750 Publication Model: Print Cited Medium: Internet ISSN: 1469-896X (Electronic) Linking ISSN: 09618368 NLM ISO Abbreviation: Protein Sci Subsets: MEDLINE

Výrazy zo slovníka MeSH: Endosomal Sorting Complexes Required for Transport*/chemistry , Endosomal Sorting Complexes Required for Transport*/metabolism , Endosomal Sorting Complexes Required for Transport*/genetics , Bacterial Proteins*/chemistry , Bacterial Proteins*/metabolism , Bacterial Proteins*/genetics , Cyanobacteria*/chemistry , Cyanobacteria*/metabolism, Protein Binding ; Protein Conformation, alpha-Helical ; Models, Molecular ; Amino Acid Sequence ; Protein Structure, Secondary