Search Results - "Paraffin Embedding/methods"

Multiplex immunofluorescence staining of coverslip‐mounted paraffin‐embedded tissue sections

Authors: Elsborg, Søren Hejgaard Pedersen, Gitte Albinus Madsen, Mia Gebauer et al.

Source: Elsborg, S H, Pedersen, G A, Madsen, M G, Keller, A K, Nørregaard, R & Nejsum, L N 2023, 'Multiplex immunofluorescence staining of coverslip-mounted paraffin-embedded tissue sections', APMIS-Journal of Pathology, Microbiology and Immunology, vol. 131, no. 8, pp. 394-402. https://doi.org/10.1111/apm.13329

Subject Terms: immunostaining, Paraffin Embedding, Paraffin Embedding/methods, Staining and Labeling, Histopathology, Fluorescent Antibody Technique, tissue, Kidney, multiplex, microscopy, renal/kidney, Animals, Humans, pathology, coverslips, image resolution

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37211896
https://pure.au.dk/portal/en/publications/04e46990-c16c-4e68-a080-91685b2896e4
https://pure.au.dk/portal/en/publications/04e46990-c16c-4e68-a080-91685b2896e4
https://doi.org/10.1111/apm.13329
https://pure.au.dk/ws/files/400675446/APMIS_-_2023_-_Elsborg_-_Multiplex_immunofluorescence_staining_of_coverslip_mounted_paraffin_embedded_tissue_sections.pdf

Robust detection of clinically relevant features in single-cell RNA profiles of patient-matched fresh and formalin-fixed paraffin-embedded (FFPE) lung cancer tissue

Authors: Alexandra Trinks Miha Milek Dieter Beule et al.

Source: Cell Oncol (Dordr)

Subject Terms: Cryopreservation, 0301 basic medicine, 0303 health sciences, Paraffin Embedding, Lung Neoplasms, Tissue Fixation, Research, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, 03 medical and health sciences, Formaldehyde, Humans, Gene Expression Regulation, Neoplastic [MeSH], Cryopreservation/methods [MeSH], Formaldehyde [MeSH], Transcriptome/genetics [MeSH], Humans [MeSH], Lung Neoplasms/genetics [MeSH], Single-cell transcriptomics, FFPE tissue analysis, Tissue Fixation/methods [MeSH], Single-Cell Analysis/methods [MeSH], Tumor heterogeneity, Gene Expression Profiling/methods [MeSH], Lung Neoplasms/pathology [MeSH], Lung cancer, Paraffin Embedding/methods [MeSH], Single-cell RNA sequencing, Technology Platforms, Single-Cell Analysis, Transcriptome

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/38300468
https://edoc.mdc-berlin.de/id/eprint/24076/2/24076suppl.zip
https://repository.publisso.de/resource/frl:6503961

Fresh and frozen cardiac tissue are comparable in DNA methylation array β-values, but formalin-fixed, paraffin-embedded tissue may overestimate DNA methylation levels

Authors: Dupont, Mikkel Eriksen Jacobsen, Stine Bøttcher Christiansen, Steffan et al.

Source: Sci Rep
Scientific Reports, Vol 13, Iss 1, Pp 1-11 (2023)
Dupont, M E, Jacobsen, S B, Christiansen, S N N, Tfelt-Hansen, J, Smerup, M H, Andersen, J D & Morling, N 2023, 'Fresh and frozen cardiac tissue are comparable in DNA methylation array β-values, but formalin-fixed, paraffin-embedded tissue may overestimate DNA methylation levels', Scientific Reports, vol. 13, no. 1, 16381, pp. 16381. https://doi.org/10.1038/s41598-023-43788-2
Dupont, M E, Jacobsen, S B, Christiansen, S, Tfelt-Hansen, J, Smerup, M H, Andersen, J D & Morling, N 2023, ' Fresh and frozen cardiac tissue are comparable in DNA methylation array β-values, but formalin-fixed, paraffin-embedded tissue may overestimate DNA methylation levels ', Scientific Reports, vol. 13, 16381 . https://doi.org/10.1038/s41598-023-43788-2

Subject Terms: Faculty of Health and Medical Sciences, name=Faculty of Health and Medical Sciences, DNA methylation, Tissue Fixation, Paraffin Embedding, Paraffin Embedding/methods, Science, Cardiac Catheterization/methods, Epigenetic, Reproducibility of Results, DNA Methylation, Article, Formaldehyde, Medicine, Humans, Tissue Fixation/methods

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37773256
https://doaj.org/article/8e82ee68189f4169ad2396f415d01eb0
https://vbn.aau.dk/da/publications/e6877f60-5abf-460a-91c9-bb8c2cf93c5d
http://www.scopus.com/inward/record.url?scp=85173568720&partnerID=8YFLogxK
https://vbn.aau.dk/ws/files/550822744/s41598-023-43788-2.pdf
https://doi.org/10.1038/s41598-023-43788-2
https://curis.ku.dk/ws/files/373461537/s41598_023_43788_2.pdf

Formalin-Fixed, Paraffin-Embedded-Targeted Locus Capture: A Next-Generation Sequencing Technology for Accurate DNA-Based Gene Fusion Detection in Bone and Soft Tissue Tumors: A Next-Generation Sequencing Technology for Accurate DNA-Based Gene Fusion Detection in Bone and Soft Tissue Tumors

Authors: Stelloo, Ellen Meijers, Ruud W.J. Swennenhuis, Joost F. et al.

Contributors: Stelloo, Ellen Meijers, Ruud W.J. Swennenhuis, Joost F. et al.

Source: Journal of Molecular Diagnostics, 25, 10, pp. 758-770
The journal of molecular diagnostics
JOURNAL OF MOLECULAR DIAGNOSTICS

Subject Terms: High-Throughput Nucleotide Sequencing/methods, Technology, Paraffin Embedding, Tissue Fixation, Paraffin Embedding/methods, Radboud University Medical Center, High-Throughput Nucleotide Sequencing, Soft Tissue Neoplasms, DNA, DNA/genetics, Radboudumc 9: Rare cancers Pathology, Pathology and Forensic Medicine, 3. Good health, Formaldehyde, Medicine and Health Sciences, Journal Article, Molecular Medicine, Humans, Human medicine, Gene Fusion, Soft Tissue Neoplasms/diagnosis

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37517473
https://hdl.handle.net/https://repository.ubn.ru.nl/handle/2066/296779
https://doi.org/10.1016/j.jmoldx.2023.06.012
https://research.rug.nl/en/publications/ed5152b9-2fe4-49ca-98da-50d1e90196d0
https://hdl.handle.net/11370/ed5152b9-2fe4-49ca-98da-50d1e90196d0
https://doi.org/10.1016/j.jmoldx.2023.06.012
https://dspace.library.uu.nl/handle/1874/449641
https://hdl.handle.net/2066/296779
https://repository.ubn.ru.nl//bitstream/handle/2066/296779/296779.pdf
https://repository.uantwerpen.be/docstore/d:irua:19347
https://hdl.handle.net/10067/1989600151162165141
https://hdl.handle.net/1887/3754118
http://doi.org/10.1016/j.jmoldx.2023.06.012
https://biblio.ugent.be/publication/01H6P5D9SDK6T3GE43EVQEHH82
http://hdl.handle.net/1854/LU-01H6P5D9SDK6T3GE43EVQEHH82
https://biblio.ugent.be/publication/01H6P5D9SDK6T3GE43EVQEHH82/file/01HAPNHB0BN4WRNNJVV4R54BZ2

Molecular detection and identification of zygomycetes species from paraffin-embedded tissues in a murine model of disseminated zygomycosis: a collaborative European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Fungal Infection Study Group (EFISG) evaluation.

Authors: Dannaoui, E. Schwarz, P. Slany, M. et al.

Subject Terms: Animals, Brain/microbiology, DNA, Fungal/genetics, Fungal/isolation & purification, Ribosomal Spacer/genetics, Ribosomal Spacer/isolation & purification, Female, Fungi/classification, Fungi/genetics, Fungi/isolation & purification, Kidney/microbiology, Mice, Paraffin Embedding/methods, Pathology, Molecular/methods, Polymerase Chain Reaction/methods, Reproducibility of Results, Sensitivity and Specificity, Specimen Handling/methods, Zygomycosis/diagnosis, Zygomycosis/microbiology, Zygomycosis/pathology

Relation: Journal of Clinical Microbiology; https://iris.unil.ch/handle/iris/94617; serval:BIB_11F9397A5AE3; 000278118100008

Availability: https://iris.unil.ch/handle/iris/94617
https://doi.org/10.1128/JCM.02319-09

Relative quantification of proteins in formalin-fixed paraffin-embedded breast cancer tissue using multiplexed mass spectrometry assays

Authors: Steiner, Carine Lescuyer, Pierre Cutler, Paul et al.

Source: ISSN: 1535-9476 ; Molecular & cellular proteomics, vol. 21, no. 11 (2022) 100416.

Subject Terms: info:eu-repo/classification/ddc/616.07, info:eu-repo/classification/ddc/616, Biomarker, Breast cancer, Formalin-fixed paraffin-embedded tissues, Mass spectrometry, Multiple reaction monitoring, Protein assay, Humans, Paraffin Embedding / methods, Tissue Fixation / methods, Formaldehyde / chemistry, Mass Spectrometry / methods, Proteins, Peptides, Biomarkers, Triple Negative Breast Neoplasms

Relation: info:eu-repo/semantics/altIdentifier/pmid/36152753; info:eu-repo/semantics/dataset/url/https://panoramaweb.org/Panorama%20Public/2021/Roche%20pRED%20proteomics%20-%20Triple-negative%20breast%20cancer%20FFPE%20tissues/project-begin.view?; info:eu-repo/semantics/dataset/url/http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD025135; unige:166337

Availability: https://archive-ouverte.unige.ch/unige:166337

Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing

Authors: Allahyar, Amin Pieterse, Mark Swennenhuis, Joost et al.

Source: Allahyar , A , Pieterse , M , Swennenhuis , J , Los-de Vries , G T , Yilmaz , M , Leguit , R , Meijers , R W J , van der Geize , R , Vermaat , J , Cleven , A , van Wezel , T , Diepstra , A , van Kempen , L C , Hijmering , N J , Stathi , P , Sharma , M , Melquiond , A S J , de Vree , P J P , Verstegen , M J A M , Krijger , P H L ....

Subject Terms: Computational Biology/methods, Gene Rearrangement, Genes, bcl-2/genetics, myc/genetics, High-Throughput Nucleotide Sequencing/methods, Humans, In Situ Hybridization, Fluorescence/methods, Lymphoma, B-Cell/diagnosis, Non-Hodgkin/diagnosis, Paraffin Embedding/methods, Proto-Oncogene Proteins c-bcl-6/genetics, Reproducibility of Results, Retrospective Studies, Sensitivity and Specificity, Tissue Fixation/methods, Translocation, Genetic

Availability: https://pure.knaw.nl/portal/en/publications/e0f9febc-ee95-4100-8a8e-e01d8ba006da
https://doi.org/10.1038/s41467-021-23695-8
https://hdl.handle.net/20.500.11755/e0f9febc-ee95-4100-8a8e-e01d8ba006da

Evaluation of the use of formalin-fixed and paraffin- embedded archive gastric tissues for microbiota characterization using next-generation sequencing

Authors: Pinto-Ribeiro, I Ferreira, RM Pereira-Marques, J et al.

Contributors: Pinto-Ribeiro, I Ferreira, RM Pereira-Marques, J et al.

Subject Terms: DNA Barcoding, Taxonomic / methods, Fixatives / adverse effects, Formaldehyde / adverse effects, Genome, Bacterial, High-Throughput Nucleotide Sequencing / methods, Humans, Microbiota, Paraffin Embedding / methods, RNA, Ribosomal, 16S / genetics, Stomach / cytology, Stomach / microbiology, Tissue Fixation / methods

File Description: application/pdf

Relation: info:eu-repo/grantAgreement/FCT/POR_NORTE/SFRH%2FBD%2F110803%2F2015/PT; International Journal of Molecular Sciences, vol.21(3):1096; https://www.mdpi.com/1422-0067/21/3/1096; https://hdl.handle.net/10216/141462

Availability: https://hdl.handle.net/10216/141462
https://doi.org/10.3390/ijms21031096

Clinical utility of KRAS status in circulating plasma DNA compared to archival tumour tissue from patients with metastatic colorectal cancer treated with anti-epidermal growth factor receptor therapy

Authors: Spindler, Karen-Lise Garm Pallisgaard, Niels Appelt, Ane Lindegaard et al.

Source: Spindler, K-L G, Pallisgaard, N, Appelt, A L, Andersen, R F, Schou, J V, Nielsen, D, Pfeiffer, P, Yilmaz, M, Johansen, J S, Hoegdall, E V, Jakobsen, A & Jensen, B V 2015, 'Clinical utility of KRAS status in circulating plasma DNA compared to archival tumour tissue from patients with metastatic colorectal cancer treated with anti-epidermal growth factor receptor therapy', European Journal of Cancer, vol. 51, no. 17, pp. 2678-2685. https://doi.org/10.1016/j.ejca.2015.06.118
Spindler, K-L G, Pallisgaard, N, Appelt, A L, Andersen, R F, Schou, J V, Nielsen, D, Pfeiffer, P, Yilmaz, M, Johansen, J S, Hoegdall, E V, Jakobsen, A & Jensen, B V 2015, ' Clinical utility of KRAS status in circulating plasma DNA compared to archival tumour tissue from patients with metastatic colorectal cancer treated with anti-epidermal growth factor receptor therapy ', European journal of cancer (Oxford, England : 1990), vol. 51, no. 17, pp. 2678-2685 . https://doi.org/10.1016/j.ejca.2015.06.118

Subject Terms: Adult, Male, Tissue Fixation, Camptothecin/administration & dosage, Paraffin Embedding/methods, DNA, Neoplasm/blood, Cetuximab, Kaplan-Meier Estimate, Irinotecan, Proto-Oncogene Proteins p21(ras), Proto-Oncogene Proteins p21(ras)/genetics, Outcome Assessment (Health Care), 03 medical and health sciences, 0302 clinical medicine, ErbB Receptors/antagonists & inhibitors, Antineoplastic Combined Chemotherapy Protocols, Outcome Assessment, Health Care, 80 and over, Humans, Prospective Studies, Neoplasm Metastasis, Cetuximab/administration & dosage, Proportional Hazards Models, Aged, Aged, 80 and over, Paraffin Embedding, Epidermal Growth Factor, Colorectal Neoplasms/drug therapy, DNA, DNA, Neoplasm, Outcome Assessment (Health Care)/methods, Middle Aged, Prognosis, 3. Good health, ErbB Receptors, Multivariate Analysis, Mutation, Neoplasm, Tissue Fixation/methods, Camptothecin, Female, Antineoplastic Combined Chemotherapy Protocols/therapeutic use, Colorectal Neoplasms, Receptor

Access URL: https://pubmed.ncbi.nlm.nih.gov/26508156
https://vbn.aau.dk/da/publications/38b8feb0-f48e-42b8-b68f-af70943943f9
https://doi.org/10.1016/j.ejca.2015.06.118
https://www.forskningsdatabasen.dk/en/catalog/2467026601
https://europepmc.org/abstract/MED/26508156
https://vbn.aau.dk/da/publications/clinical-utility-of-kras-status-in-circulating-plasma-dna-compare
https://pubmed.ncbi.nlm.nih.gov/26508156/
https://www.sciencedirect.com/science/article/abs/pii/S0959804915006449
https://forskning.ruc.dk/da/publications/clinical-utility-of-kras-status-in-circulating-plasma-dna-compare
https://portal.findresearcher.sdu.dk/da/publications/60370d82-9df5-476e-ada1-d13d9d28152f
https://doi.org/10.1016/j.ejca.2015.06.118
https://portal.findresearcher.sdu.dk/da/publications/60370d82-9df5-476e-ada1-d13d9d28152f
https://pure.au.dk/portal/en/publications/6842427f-e76a-42ef-b4a2-ae83794e621d
https://doi.org/10.1016/j.ejca.2015.06.118

Relative Quantification of Proteins in Formalin-Fixed Paraffin-Embedded Breast Cancer Tissue Using Multiplexed Mass Spectrometry Assays

Authors: Carine Steiner Pierre Lescuyer Paul Cutler et al.

Source: Mol Cell Proteomics

Subject Terms: Multiple reaction monitoring, Paraffin Embedding, Tissue Fixation, Mass spectrometry, Research, Paraffin Embedding / methods, Tissue Fixation / methods, Proteins, Triple Negative Breast Neoplasms, Biomarker, 616.07, Formalin-fixed paraffin-embedded tissues, Mass Spectrometry, 3. Good health, 03 medical and health sciences, Breast cancer, 0302 clinical medicine, Formaldehyde, Humans, Formaldehyde / chemistry, Peptides, Protein assay, Mass Spectrometry / methods, Biomarkers

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/36152753
https://archive-ouverte.unige.ch/unige:166337
https://doi.org/10.1016/j.mcpro.2022.100416

Laser Microdissection-Based Microproteomics of Formalin-Fixed and Paraffin-Embedded (FFPE) Tissues

Authors: Dominique Baiwir Edwin De Pauw Nicolas Smargiasso et al.

Source: Methods in Molecular Biology ISBN: 9781493975570

Subject Terms: 0301 basic medicine, Proteomics, Tissue Fixation, Paraffin Embedding/methods, Proteins/isolation & purification, Histopathology, Microproteomics, Laser Capture Microdissection, Formalin-fixed and paraffin-embedded tissues, 03 medical and health sciences, Formaldehyde, Genetics, Humans, Molecular Biology, Cancer, Proteins/analysis, 0303 health sciences, Paraffin Embedding, Proteins, Life sciences, 3. Good health, Sciences du vivant, Formaldehyde/chemistry, Tissue Fixation/methods, Laser microdissection, Proteomics/methods, Laser Capture Microdissection/methods

Access URL: https://pubmed.ncbi.nlm.nih.gov/29344853
https://www.ncbi.nlm.nih.gov/pubmed/29344853
https://europepmc.org/article/MED/29344853
https://rd.springer.com/protocol/10.1007/978-1-4939-7558-7_2
https://link.springer.com/protocol/10.1007/978-1-4939-7558-7_2
https://hdl.handle.net/2268/300543
https://doi.org/10.1007/978-1-4939-7558-7_2

MALDI Imaging Combined with Laser Microdissection-Based Microproteomics for Protein Identification: Application to Intratumor Heterogeneity Studies.

Authors: Longuespée, Rémi Alberts, Deborah Baiwir, Dominique et al.

Source: Methods in Molecular Biology, 1788, 297-312 (2018)

Subject Terms: Peptides, Proteins, 1HG84L3525 (Formaldehyde), Animals, Breast/chemistry/pathology, Breast Neoplasms/chemistry/pathology, Female, Formaldehyde/chemistry, Humans, Laser Capture Microdissection/methods, Paraffin Embedding/methods, Peptides/analysis, Proteins/analysis, Proteomics/methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods, Tissue Fixation/methods, Formalin-fixed and paraffin-embedded tissues, Histopathology, Intratumor heterogeneity, Laser microdissection, MALDI imaging, Microproteomics, Protein identification, Physical, chemical, mathematical & earth Sciences, Chemistry, Physique

Relation: urn:issn:1064-3745; urn:issn:1940-6029; https://orbi.uliege.be/handle/2268/336679; info:hdl:2268/336679; https://orbi.uliege.be/bitstream/2268/336679/1/10.1007%4076512017114.pdf; info:pmid:29224050

Availability: https://orbi.uliege.be/handle/2268/336679
https://orbi.uliege.be/bitstream/2268/336679/1/10.1007%4076512017114.pdf
https://doi.org/10.1007/7651_2017_114

Application of tissue microarray for atherectomized tissues from peripheral arterial disease

Authors: Junjeong Choi Se Hoon Kim Dong Min Kim et al.

Contributors: Junjeong Choi Se Hoon Kim Dong Min Kim et al.

Source: Pathology - Research and Practice. 207:568-572

Subject Terms: Atherosclerotic/metabolism, Atherectomy, Paraffin Embedding, Tissue Array Analysis/methods, Atherosclerotic/pathology, Biomarkers/metabolism, Peripheral Arterial Disease/metabolism, Plaque, Atherosclerotic, Tissue microarray, Peripheral Arterial Disease, 03 medical and health sciences, 0302 clinical medicine, Peripheral Arterial Disease/pathology, Tissue Array Analysis, Peripheral arterial disease, Humans, Intravascular ultrasound, Paraffin Embedding/methods, Biomarkers, Plaque, Aged

File Description: 568~572

Access URL: https://pubmed.ncbi.nlm.nih.gov/21788106
https://europepmc.org/abstract/MED/21788106
https://koreauniv.pure.elsevier.com/en/publications/application-of-tissue-microarray-for-atherectomized-tissues-from-
https://www.ncbi.nlm.nih.gov/pubmed/21788106
https://yonsei.pure.elsevier.com/en/publications/application-of-tissue-microarray-for-atherectomized-tissues-from-
http://www.sciencedirect.com/science/article/pii/S0344033811001464
https://www.sciencedirect.com/science/article/pii/S0344033811001464

Detection of classical and atypical/Nor98 scrapie by the paraffin‐embedded tissue blot method

Authors: Wemheuer, W. M. Benestad, S. L. Wrede, A. et al.

Contributors: Wemheuer, W. M. Benestad, S. L. Wrede, A. et al.

Source: Veterinary Record. 164:677-681

Subject Terms: Central Nervous System, 0301 basic medicine, Paraffin Embedding, Sheep, Lymphoid Tissue, Prions, Blotting, Western, Palatine Tonsil, Brain, 04 agricultural and veterinary sciences, Immunohistochemistry, Sensitivity and Specificity, 3. Good health, 0403 veterinary science, 03 medical and health sciences, Animals, Blotting, Western/methods, Blotting, Western/veterinary, Brain/pathology, Case-Control Studies, Central Nervous System/pathology, Immunohistochemistry/veterinary, Lymphoid Tissue/pathology, Palatine Tonsil/pathology, Paraffin Embedding/methods, Prions/genetics, Prions/isolation & purification, Scrapie/genetics, Scrapie/pathology, Scrapie

Access URL: https://publications.goettingen-research-online.de/bitstream/2/93378/2/Wemheuer_Detection%20of%20classical%20and%20atypical%20scrapie.pdf
https://pubmed.ncbi.nlm.nih.gov/19483208
https://www.ncbi.nlm.nih.gov/pubmed/19483208
https://veterinaryrecord.bmj.com/content/164/22/677
https://www.cabdirect.org/cabdirect/abstract/20093147889
https://resolver.sub.uni-goettingen.de/purl?gro-2/93378
https://resolver.sub.uni-goettingen.de/purl?gs-1/10436

Pathology findings and validation of gastric and esophageal cancer cases in a European cohort (EPIC/EUR-GAST)

Authors: Fátima Carneiro Cátia Moutinho Guillem Pera et al.

Contributors: Fátima Carneiro Cátia Moutinho Guillem Pera et al.

Source: Carneiro, F, Moutinho, C, Pera, G, Caldas, C, Fenger, C, Offerhaus, J, Save, V, Stenling, R, Nesi, G, Mahlke, U, Bläker, H, Torrado, J, Roukos, D H, Sabourin, J-C, Boeing, H, Palli, D, Bueno-de-Mesquita, H B, Overvad, K, Bingham, S, Clavel-Chapelon, F, Lund, E, Trichopoulou, A, Manjer, J, Riboli, E & Gonzalez, C A 2007, ' Pathology findings and validation of gastric and esophageal cancer cases in a European cohort (EPIC/EUR-GAST) ', Scandinavian Journal of Gastroenterology, vol. 42, no. 5, pp. 618-627 . https://doi.org/10.1080/00365520601101641
Carneiro, F, Moutinho, C, Pera, G, Caldas, C, Fenger, C, Offerhaus, J, Save, V, Stenling, R, Nesi, G, Mahlke, U, Blaker, H, Torrado, J, Roukos, D H, Sabourin, J C, Boeing, H, Palli, D, Bueno-de-Mesquita, H B, Overvad, K, Bingham, S, Clavel-Chapelon, F, Lund, E, Trichopoulou, A, Manjer, J, Riboli, E & Gonzalez, C A 2007, 'Pathology findings and validation of gastric and esophageal cancer cases in a European cohort (EPIC/EUR-GAST)', Scandinavian Journal of Gastroenterology, vol. 42, no. 5, pp. 618-27.

Subject Terms: Adult, Male, Paraffin Embedding, Esophageal Neoplasms, Reproducibility of Results, Adenocarcinoma, Middle Aged, Adenocarcinoma/classification/epidemiology/*pathology, Europe/epidemiology, 3. Good health, Diagnosis, Differential, Europe, 03 medical and health sciences, 0302 clinical medicine, Stomach Neoplasms/classification/epidemiology/*pathology, Stomach Neoplasms, Esophageal Neoplasms/classification/epidemiology/*pathology, Humans, Female, Paraffin Embedding/*methods, Prospective Studies, Aged, Follow-Up Studies

Access URL: https://pubmed.ncbi.nlm.nih.gov/17454883
https://www.ncbi.nlm.nih.gov/pubmed/17454883
https://pubmed.ncbi.nlm.nih.gov/17454883/
http://www.diva-portal.org/smash/record.jsf?pid=diva2:147225
https://www.tandfonline.com/doi/full/10.1080/00365520601101641
https://lup.lub.lu.se/record/659750
https://www.tandfonline.com/doi/abs/10.1080/00365520601101641
http://olympias.lib.uoi.gr/jspui/handle/123456789/19446
https://portal.findresearcher.sdu.dk/da/publications/75f0f770-cd7b-11dc-8674-000ea68e967b
https://hdl.handle.net/2158/347525
https://rivm.openrepository.com/handle/10029/642370
https://pure.au.dk/portal/en/publications/a5396120-1d81-11dc-bee9-02004c4f4f50

A biomarker panel predicts progression of Barrett's esophagus to esophageal adenocarcinoma

Authors: Duits, L. C. Lao-Sirieix, P. Wolf, W. A. et al.

Contributors: Duits, L. C. Lao-Sirieix, P. Wolf, W. A. et al.

Source: Duits, L C, Lao-Sirieix, P, Wolf, W A, O'Donovan, M, Galeano-Dalmau, N, Meijer, S L, Offerhaus, G J A, Redman, J, Crawte, J, Zeki, S, Pouw, R E, Chak, A, Shaheen, N J, Bergman, J J G H M & Fitzgerald, R C 2019, 'A biomarker panel predicts progression of Barrett's esophagus to esophageal adenocarcinoma', Diseases of the Esophagus, vol. 32, no. 1. https://doi.org/10.1093/dote/doy102

Subject Terms: Male, Paraffin Embedding/methods, Esophageal Neoplasms, Neoplastic progression, Biopsy, Adenocarcinoma, Esophagoscopy/statistics & numerical data, Barrett's esophagus, Barrett Esophagus, 03 medical and health sciences, Esophagus, 0302 clinical medicine, Predictive Value of Tests, Biomarkers, Tumor, Humans, Tumor/analysis, Esophageal Neoplasms/etiology, Risk Assessment/methods, Aged, Netherlands, Barrett Esophagus/complications, Hyperplasia, Paraffin Embedding, General Medicine, Middle Aged, Adenocarcinoma/etiology, Biopsy/methods, 3. Good health, Population Surveillance/methods, Esophagus/pathology, ROC Curve, Area Under Curve, Case-Control Studies, Population Surveillance, Disease Progression, Female, Esophageal adenocarcinoma, Esophagoscopy, Biomarkers

File Description: application/pdf

Access URL: https://europepmc.org/articles/pmc6303732?pdf=render
https://pubmed.ncbi.nlm.nih.gov/30496496
https://research.vumc.nl/en/publications/a-biomarker-panel-predicts-progression-of-barretts-esophagus-to-e
https://pubmed.ncbi.nlm.nih.gov/30496496/
https://europepmc.org/abstract/MED/30496496
https://www.narcis.nl/publication/RecordID/oai%3Apure.atira.dk%3Apublications%2F38c6aba3-31a6-4dbc-931a-7909c587ad48
https://academic.oup.com/dote/article/32/1/doy102/5212855
https://www.ncbi.nlm.nih.gov/pubmed/30496496
https://research.vumc.nl/en/publications/38c6aba3-31a6-4dbc-931a-7909c587ad48
https://dspace.library.uu.nl/handle/1874/438804

Focused molecular analysis of small cell lung cancer: feasibility in routine clinical practice.:Feasibility in routine clinical practice

Authors: Abdelraouf, Fatma Sharp, Adam Maurya, Manisha et al.

Source: Abdelraouf, F, Sharp, A, Maurya, M, Mair, D, Wotherspoon, A, Leary, A, Gonzalez de Castro, D, Bhosle, J, Nassef, A, Gaafar, T, Popat, S, Yap, T A & O'Brien, M 2015, 'Focused molecular analysis of small cell lung cancer: feasibility in routine clinical practice. Feasibility in routine clinical practice', BMC Research Notes, vol. 8, no. 688, 688. https://doi.org/10.1186/s13104-015-1675-x, https://doi.org/10.1186/s13104-015-1675-x

Subject Terms: Aged, 80 and over, Anaplastic Lymphoma Kinase, DNA Mutational Analysis/methods, ErbB Receptors/genetics, Feasibility Studies, Female, GTP Phosphohydrolases/genetics, Genetic Predisposition to Disease/genetics, Humans, Immunohistochemistry, In Situ Hybridization, Fluorescence, Lung Neoplasms/diagnosis, Male, Membrane Proteins/genetics, Middle Aged, Molecular Diagnostic Techniques/methods, Mutation, Paraffin Embedding/methods, Proto-Oncogene Proteins B-raf/genetics, Proto-Oncogene Proteins c-met/genetics, Proto-Oncogene Proteins p21(ras)/genetics, Receptor Protein-Tyrosine Kinases/genetics, Reproducibility of Results, Sensitivity and Specificity, Small Cell Lung Carcinoma/diagnosis, Tissue Fixation/methods, /dk/atira/pure/subjectarea/asjc/1300/1300, name=General Biochemistry,Genetics and Molecular Biology

File Description: application/pdf

Availability: https://pure.qub.ac.uk/en/publications/33885afe-3122-4e9e-afa2-38ce51383e8d
https://doi.org/10.1186/s13104-015-1675-x
https://pureadmin.qub.ac.uk/ws/files/78646946/Focused_molecular.pdf

Human herpes virus 6 and endogenous biotin in salivary glands

Authors: Green M Sviland L Taylor CE et al.

Source: Journal of Clinical Pathology. 45:788-790

Subject Terms: Cell Nucleus, 0301 basic medicine, Cytoplasm - Chemistry, Cytoplasm, 0303 health sciences, Paraffin Embedding, Herpesvirus 6, Human, Biotin, Human - Isolation & Purification, Biotin - Analysis, Salivary Glands, 3. Good health, Immunoenzyme Techniques, 03 medical and health sciences, Paraffin Embedding - Methods, Frozen Sections, Humans, Herpesvirus 6, Salivary Glands - Chemistry - Microbiology, Cell Nucleus - Chemistry, Herpesvirus 6, Human - Isolation & Purification

Access URL: https://jcp.bmj.com/content/jclinpath/45/9/788.full.pdf
https://pubmed.ncbi.nlm.nih.gov/1328329
https://jcp.bmj.com/content/45/9/788
https://core.ac.uk/display/3520281
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC495105
http://europepmc.org/articles/PMC495105
https://jcp.bmj.com/content/jclinpath/45/9/788.full.pdf
https://pubmed.ncbi.nlm.nih.gov/1328329/
http://hdl.handle.net/10722/179743

High-resolution genomic alterations in Barrett's metaplasia of patients who progress to esophageal dysplasia and adenocarcinoma

Authors: Sepulveda, Jorge L. Komissarova, Elena V. Kongkarnka, Sarawut et al.

Source: Pathology Faculty Publications

Subject Terms: adenocarcinoma/*diagnosis/genetics, Barrett esophagus/*diagnosis/genetics, biomarkers, carcinogenesis/*genetics, disease progression, esophageal neoplasms/*genetics/pathology, molecular inversion probes assay, OncoScan array, paraffin embedding/*methods, somatic copy number aberrations, tumor/analysis/genetics

Relation: https://hsrc.himmelfarb.gwu.edu/smhs_path_facpubs/624

Availability: https://hsrc.himmelfarb.gwu.edu/smhs_path_facpubs/624
https://doi.org/10.1002/ijc.32351

Laser Microdissection-Based Microproteomics of Formalin-Fixed and Paraffin-Embedded (FFPE) Tissues.

Authors: Longuespée, Rémi Baiwir, Dominique Mazzucchelli, Gabriel et al.

Source: Methods in Molecular Biology, 1723, 19 - 31 (2018)

Subject Terms: Cancer, Formalin-fixed and paraffin-embedded tissues, Histopathology, Laser microdissection, Microproteomics, Proteins, Formaldehyde, Formaldehyde/chemistry, Humans, Laser Capture Microdissection/methods, Paraffin Embedding/methods, Proteins/analysis, Proteins/isolation & purification, Proteomics/methods, Tissue Fixation/methods, Laser Capture Microdissection, Paraffin Embedding, Proteomics, Tissue Fixation, Molecular Biology, Genetics, Life sciences, Sciences du vivant

Relation: http://link.springer.com/content/pdf/10.1007/978-1-4939-7558-7_2; urn:issn:1064-3745; urn:issn:1940-6029

Access URL: https://orbi.uliege.be/handle/2268/300543