Suchergebnisse - "PROTEIN conformation"

Research updates and progress on nutritional significance of the amides I and II, alpha-helix and beta-sheet ratios, microbial protein synthesis, and steam pressure toasting condition with globar and synchrotron molecular microspectroscopic techniques with chemometrics.

Autoren: Rodriguez-Espinosa ME Guevara-Oquendo VH He J et al.

Quelle: Critical reviews in food science and nutrition [Crit Rev Food Sci Nutr] 2025; Vol. 65 (2), pp. 367-381. Date of Electronic Publication: 2023 Nov 23.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Taylor & Francis Group Country of Publication: United States NLM ID: 8914818 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-7852 (Electronic) Linking ISSN: 10408398 NLM ISO Abbreviation: Crit Rev Food Sci Nutr Subsets: MEDLINE

MeSH-Schlagworte: Amides*/chemistry , Steam* , Protein Conformation, alpha-Helical*, Animals ; Animal Feed/analysis ; Protein Conformation, beta-Strand ; Synchrotrons ; Nutritive Value ; Pressure ; Bacterial Proteins ; Food Handling/methods ; Hot Temperature ; Protein Biosynthesis

Functional sub-states link conformational landscapes and protein evolution.

Autoren: Sakuma M Buda K Bunzel HA et al.

Quelle: Current opinion in structural biology [Curr Opin Struct Biol] 2025 Oct; Vol. 94, pp. 103134. Date of Electronic Publication: 2025 Aug 16.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr Opin Struct Biol Subsets: MEDLINE

MeSH-Schlagworte: Proteins*/chemistry , Proteins*/genetics , Proteins*/metabolism , Evolution, Molecular* , Protein Conformation*, Models, Molecular ; Humans ; Mutation

Recent advances in quantifying protein conformational ensembles with dipolar EPR spectroscopy.

Autoren: Dastvan R Stoll S

Quelle: Current opinion in structural biology [Curr Opin Struct Biol] 2025 Oct; Vol. 94, pp. 103139. Date of Electronic Publication: 2025 Aug 23.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr Opin Struct Biol Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Proteins*/chemistry, Electron Spin Resonance Spectroscopy/methods ; Spin Labels ; Models, Molecular

Distance-AF improves predicted protein structure models by AlphaFold2 with user-specified distance constraints.

Autoren: Zhang Y Zhang Z Kagaya Y et al.

Quelle: Communications biology [Commun Biol] 2025 Sep 30; Vol. 8 (1), pp. 1392. Date of Electronic Publication: 2025 Sep 30.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Proteins*/chemistry , Models, Molecular* , Computational Biology*/methods , Software*, Cryoelectron Microscopy ; Protein Folding

Data-Driven Generation of Conformational Ensembles and Ternary Complexes for PROTAC and Other Chimera Systems.

Autoren: Montisci F Friggeri L Burusco-Goni KK et al.

Quelle: Journal of chemical information and modeling [J Chem Inf Model] 2025 Sep 22; Vol. 65 (18), pp. 9541-9556. Date of Electronic Publication: 2025 Sep 05.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Proteolysis Targeting Chimera*/chemistry, Databases, Protein ; Models, Molecular ; Proteolysis ; Ubiquitin-Protein Ligases/chemistry

AlphaFold Protein Structure Database and 3D-Beacons: New Data and Capabilities.

Autoren: Fleming J Magana P Nair S et al.

Quelle: Journal of molecular biology [J Mol Biol] 2025 Aug 01; Vol. 437 (15), pp. 168967. Date of Electronic Publication: 2025 Jan 29.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

MeSH-Schlagworte: Databases, Protein* , Proteins*/chemistry , Proteins*/genetics , Protein Conformation* , Protein Folding*, Humans ; Models, Molecular ; Software ; Computational Biology/methods

CABS-flex 3.0: an online tool for simulating protein structural flexibility and peptide modeling.

Autoren: Wróblewski K Zalewski M Kuriata A et al.

Quelle: Nucleic acids research [Nucleic Acids Res] 2025 Jul 07; Vol. 53 (W1), pp. W95-W101.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

MeSH-Schlagworte: Software* , Peptides*/chemistry , Protein Conformation* , Models, Molecular* , Proteins*/chemistry, Internet ; Molecular Dynamics Simulation

Beyond static structures: protein dynamic conformations modeling in the post-AlphaFold era.

Autoren: Cui X Ge L Chen X et al.

Quelle: Briefings in bioinformatics [Brief Bioinform] 2025 Jul 02; Vol. 26 (4).

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH-Schlagworte: Proteins*/chemistry , Protein Conformation* , Protein Folding* , Computational Biology*/methods , Models, Molecular*, Deep Learning ; Molecular Dynamics Simulation

Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association.

Autoren: Lee M Schafer JW Prabakaran J et al.

Quelle: Nature communications [Nat Commun] 2025 Jul 01; Vol. 16 (1), pp. 5622. Date of Electronic Publication: 2025 Jul 01.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Escherichia coli Proteins*/chemistry , Computational Biology*/methods , Proteins*/chemistry, Protein Folding ; Escherichia coli/metabolism ; Models, Molecular ; Algorithms ; Amino Acid Sequence ; Protein Structure, Secondary

Discrepant Effects of Hydrated and Neat Reline on the Conformational Stability of a Knotted Protein.

Autoren: Thakuria S Paul S

Quelle: The journal of physical chemistry. B [J Phys Chem B] 2025 May 15; Vol. 129 (19), pp. 4629-4640. Date of Electronic Publication: 2025 May 01.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101157530 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-5207 (Electronic) Linking ISSN: 15205207 NLM ISO Abbreviation: J Phys Chem B Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation*, Molecular Dynamics Simulation ; Protein Stability ; Solvents/chemistry ; Temperature ; Urea/chemistry ; Water/chemistry ; Methyltransferases ; Escherichia coli Proteins

LightRoseTTA: High-Efficient and Accurate Protein Structure Prediction Using a Light-Weight Deep Graph Model.

Autoren: Wang X Zhang T Liu G et al.

Quelle: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2025 May; Vol. 12 (19), pp. e2309051. Date of Electronic Publication: 2025 Mar 25.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844 (Electronic) Linking ISSN: 21983844 NLM ISO Abbreviation: Adv Sci (Weinh) Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Proteins*/chemistry , Computational Biology*/methods, Software ; Models, Molecular

Salp-J Colony Optimization-based advanced hybrid ensemble deep predictor with LSTM for protein structure prediction.

Autoren: Jadhav S Vyavahare AJ Sharma M

Quelle: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2025 Apr; Vol. 43 (6), pp. 2901-2916. Date of Electronic Publication: 2024 Mar 06.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

MeSH-Schlagworte: Proteins*/chemistry , Computational Biology*/methods , Protein Conformation*, Algorithms ; Protein Structure, Secondary ; Models, Molecular

Conformational ensembles for protein structure prediction.

Autoren: Yang J Cheng WX Zhang P et al.

Quelle: Scientific reports [Sci Rep] 2025 Mar 12; Vol. 15 (1), pp. 8513. Date of Electronic Publication: 2025 Mar 12.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Proteins*/chemistry, Protein Folding ; Humans ; Algorithms ; Intrinsically Disordered Proteins/chemistry ; Models, Molecular ; Tumor Suppressor Protein p53/chemistry ; Computational Biology/methods

Exploring Helical Fraying Linked to Dynamics and Catalysis in Adenylate Kinase.

Autoren: Mattsson J Phoeurk C Schierholz L et al.

Quelle: Biochemistry [Biochemistry] 2025 Oct 21; Vol. 64 (20), pp. 4281-4295. Date of Electronic Publication: 2025 Oct 03.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: American Chemical Society Country of Publication: United States NLM ID: 0370623 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1520-4995 (Electronic) Linking ISSN: 00062960 NLM ISO Abbreviation: Biochemistry Subsets: MEDLINE

MeSH-Schlagworte: Adenylate Kinase*/chemistry , Adenylate Kinase*/metabolism , Adenylate Kinase*/genetics , Archaeal Proteins*/chemistry , Archaeal Proteins*/metabolism, Humans ; Escherichia coli/enzymology ; Catalytic Domain ; Catalysis ; Models, Molecular ; Protein Conformation, alpha-Helical ; Adenosine Triphosphate/metabolism ; Adenosine Triphosphate/chemistry ; Biocatalysis ; Protein Conformation

Structure of a transient protein-folding intermediate by pressure-jump NMR spectroscopy.

Autoren: Masoumzadeh E Courtney JM Charlier C et al.

Quelle: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2025 Oct 14; Vol. 122 (41), pp. e2519493122. Date of Electronic Publication: 2025 Oct 08.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

MeSH-Schlagworte: Protein Folding* , Ubiquitin*/chemistry , Ubiquitin*/genetics, Nuclear Magnetic Resonance, Biomolecular/methods ; Pressure ; Magnetic Resonance Spectroscopy/methods ; Hydrogen Bonding ; Protein Conformation ; Protein Conformation, beta-Strand ; Models, Molecular

AFsample2 predicts multiple conformations and ensembles with AlphaFold2.

Autoren: Kalakoti Y Wallner B

Quelle: Communications biology [Commun Biol] 2025 Mar 05; Vol. 8 (1), pp. 373. Date of Electronic Publication: 2025 Mar 05.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE

MeSH-Schlagworte: Protein Conformation* , Computational Biology*/methods , Proteins*/chemistry, Models, Molecular ; Protein Folding

AnglesRefine: Refinement of 3D Protein Structures Using Transformer Based on Torsion Angles.

Autoren: Zhang L Zhu J Wang S et al.

Quelle: IEEE transactions on computational biology and bioinformatics [IEEE Trans Comput Biol Bioinform] 2025 Mar-Apr; Vol. 22 (2), pp. 397-408.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: IEEE Country of Publication: United States NLM ID: 9919068173606676 Publication Model: Print Cited Medium: Internet ISSN: 2998-4165 (Electronic) Linking ISSN: 29984165 NLM ISO Abbreviation: IEEE Trans Comput Biol Bioinform Subsets: MEDLINE

MeSH-Schlagworte: Proteins*/chemistry , Protein Conformation* , Computational Biology*/methods , Models, Molecular*, Databases, Protein ; Deep Learning ; Algorithms

Easy and accurate protein structure prediction using ColabFold.

Autoren: Kim G Lee S Levy Karin E et al.

Quelle: Nature protocols [Nat Protoc] 2025 Mar; Vol. 20 (3), pp. 620-642. Date of Electronic Publication: 2024 Oct 14.

Publikationsart: Journal Article; Review; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Info zur Zeitschrift: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE

MeSH-Schlagworte: Software* , Protein Conformation* , Proteins*/chemistry , Computational Biology*/methods, Humans ; Models, Molecular

Advancing protein structure prediction beyond AlphaFold2.

Autoren: Park S Myung S Baek M

Quelle: Current opinion in structural biology [Curr Opin Struct Biol] 2025 Feb; Vol. 90, pp. 102985. Date of Electronic Publication: 2025 Jan 24.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Elsevier Science Country of Publication: England NLM ID: 9107784 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-033X (Electronic) Linking ISSN: 0959440X NLM ISO Abbreviation: Curr Opin Struct Biol Subsets: MEDLINE

MeSH-Schlagworte: Proteins*/chemistry , Proteins*/metabolism , Protein Conformation* , Computational Biology*/methods, Models, Molecular ; Protein Folding ; Humans

PhiSiCal-Checkup: A Bayesian framework to validate amino acid conformations within experimental protein structures.

Autoren: Amarasinghe PR Allison L Morton CJ et al.

Quelle: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2025 Jan 07; Vol. 122 (1), pp. e2416301121. Date of Electronic Publication: 2025 Jan 02.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

MeSH-Schlagworte: Bayes Theorem* , Protein Conformation* , Amino Acids*/chemistry , Proteins*/chemistry, Software ; Models, Molecular