Search Results - "Oligonucleotide Array Sequence Analysis/statistics & numerical data"

Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.

Authors: Stauffer, Y. Theiler, G. Sperisen, P. et al.

Subject Terms: Chromosome Mapping, Cluster Analysis, DNA Probes/genetics, DNA, Viral/genetics, Endogenous Retroviruses/genetics, Evolution, Molecular, Expressed Sequence Tags, Female, Gene Expression Profiling/methods, Gene Expression Profiling/statistics & numerical data, Genes, Genome, Human, Viral, Humans, Male, Neoplasms/genetics, Neoplasms/virology, Oligonucleotide Array Sequence Analysis/methods, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Open Reading Frames/genetics, Organ Specificity/genetics, Proviruses/genetics, Species Specificity, Viral Structural Proteins/genetics

Relation: Cancer Immunity; https://iris.unil.ch/handle/iris/59522; serval:BIB_2FE0266F92B3

Availability: https://iris.unil.ch/handle/iris/59522

Regional variations in ABC transporter expression along the mouse intestinal tract.

Authors: Mutch, D.M. Anderle, P. Fiaux, M. et al.

Subject Terms: ATP-Binding Cassette Transporters/biosynthesis, ATP-Binding Cassette Transporters/genetics, Animals, Colon/chemistry, Colon/metabolism, Computer Systems, DNA, Complementary/genetics, Gene Expression Profiling/methods, Gene Expression Profiling/statistics & numerical data, Genetic Variation/genetics, Immunohistochemistry/methods, Immunohistochemistry/veterinary, Intestinal Mucosa/chemistry, Intestinal Mucosa/metabolism, Intestine, Small/chemistry, Small/metabolism, Intestines/chemistry, Intestines/metabolism, Male, Mice, Inbred ICR, Multidrug Resistance-Associated Proteins/biosynthesis, Multidrug Resistance-Associated Proteins/immunology, Oligonucleotide Array Sequence Analysis/methods, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Polymerase Chain Reaction/methods, Polymerase Chain Reaction/statistics & numerical data, Promoter Regions

Relation: Physiological Genomics; https://iris.unil.ch/handle/iris/214261; serval:BIB_7CBC6E5E85AA; 000222088700003

Availability: https://iris.unil.ch/handle/iris/214261
https://doi.org/10.1152/physiolgenomics.00150.2003

SEMBIOSPHERE: A SEMANTIC WEB APPROACH TO RECOMMENDING MICROARRAY CLUSTERING SERVICES

Authors: Yip, KY Qi, P Schultz, M et al.

Source: Biocomputing 2006. :188-199

Subject Terms: Internet, Cluster Analysis, Computational Biology, Programming Languages, Oligonucleotide Array Sequence Analysis - Statistics & Numerical Data, Algorithms, Software, Oligonucleotide Array Sequence Analysis, Semantics

Access URL: http://www.csis.hku.hk/~dcheung/publication/psb2006.pdf
https://pubmed.ncbi.nlm.nih.gov/17094239
https://psb.stanford.edu/psb-online/proceedings/psb06/yip.pdf
http://www.cse.cuhk.edu.hk/~kevinyip/papers/SemBiosphere_PSB2006.pdf
https://hub.hku.hk/handle/10722/93063
https://europepmc.org/article/MED/17094239
http://www.csis.hku.hk/~dcheung/publication/psb2006.pdf
https://www.worldscientific.com/doi/abs/10.1142/9789812701626_0018
http://hdl.handle.net/10722/93063
http://hdl.handle.net/10722/152385

Bayesian ranking and selection methods using hierarchical mixture models in microarray studies

Authors: Noma, Hisashi Matsui, Shigeyuki Omori, Takashi et al.

Contributors: Noma, Hisashi Matsui, Shigeyuki Omori, Takashi et al.

Source: Biostatistics. 11:281-289

Subject Terms: 0301 basic medicine, Biometry, Microarrays, Down-Regulation, Breast Neoplasms, Empirical Bayes, Sensitivity and Specificity, 01 natural sciences, Up-Regulation/genetics, 03 medical and health sciences, Biometry/methods, Models, Recurrence, Humans, Computer Simulation, Gene Expression Profiling/statistics & numerical data, 0101 mathematics, Hierarchical mixture models, Oligonucleotide Array Sequence Analysis, Models, Statistical, Gene Expression Profiling, Ranking and selection, Breast Neoplasms/diagnosis, Bayes Theorem, Statistical, Down-Regulation/genetics, Prognosis, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Up-Regulation, Breast Neoplasms/metabolism, Female, Gene expression, Algorithms

File Description: application/pdf

Access URL: https://academic.oup.com/biostatistics/article-pdf/11/2/281/17735471/kxp047.pdf
https://pubmed.ncbi.nlm.nih.gov/19946026
http://www.ncbi.nlm.nih.gov/pubmed/19946026
http://ci.nii.ac.jp/naid/120002949756
http://biostatistics.oxfordjournals.org/content/11/2/281.abstract
http://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/139478/1/kxp047.pdf
https://academic.oup.com/biostatistics/article/11/2/281/267535
https://mdanderson.elsevierpure.com/en/publications/bayesian-ranking-and-selection-methods-using-hierarchical-mixture

Identification of significant regional genetic variations using continuous CNV values in aCGH data

Authors: Hei Cheul Jeung Gui Youn Lee Hyun Cheol Chung et al.

Contributors: Hei Cheul Jeung Gui Youn Lee Hyun Cheol Chung et al.

Source: Genomics. 94:317-323

Subject Terms: Male, 0301 basic medicine, Comparative Genomic Hybridization/statistics & numerical data, Genetic Variation, 0206 medical engineering, Gene Dosage, Array CGH, 02 engineering and technology, DNA/genetics, Mononuclear/cytology, Genomic variations, 03 medical and health sciences, Human/genetics, Models, Neoplasms, Leukocytes, Genetics, Humans, Intestinal Mucosa, Intestinal Mucosa/cytology, Oligonucleotide Array Sequence Analysis, Chromosome Aberrations, Analysis of Variance, Comparative Genomic Hybridization, Genome, Models, Statistical, Genome, Human, Comparative Genomic Hybridization/methods, DNA, Genomics, Sequence Analysis, DNA, Statistical, Colorectal Neoplasms/genetics, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Shifted ANOVA, Oligonucleotide Array Sequence Analysis/methods, Leukocytes, Mononuclear, Female, Systematic aberrations, Colorectal Neoplasms, Sequence Analysis, Chromosomal region

File Description: 317~323

Access URL: https://pubmed.ncbi.nlm.nih.gov/19699295
http://www.ncbi.nlm.nih.gov/pubmed/19699295
https://www.sciencedirect.com/science/article/pii/S0888754309001839
https://www.sciencedirect.com/science/article/abs/pii/S0888754309001839
https://ir.ymlib.yonsei.ac.kr/handle/22282913/104621
https://yonsei.pure.elsevier.com/en/publications/identification-of-significant-regional-genetic-variations-using-c
https://mdanderson.elsevierpure.com/en/publications/identification-of-significant-regional-genetic-variations-using-c

Detecting Outlier Samples in Microarray Data

Authors: Shieh, AD Hung, YS

Source: Statistical Applications in Genetics and Molecular Biology. 8:1-24

Subject Terms: Colonic Neoplasms - diagnosis - genetics, 0301 basic medicine, Principal Component Analysis, 0303 health sciences, Outliers, DRG, Oligonucleotide Array Sequence Analysis - statistics & numerical data, Outliers, DRG - statistics & numerical data, Databases, 03 medical and health sciences, Genetic, Colonic Neoplasms, Databases, Genetic, Outliers, Humans, DRG - statistics & numerical data, Oligonucleotide Array Sequence Analysis

Access URL: http://hub.hku.hk/bitstream/10722/58817/1/content.pdf
https://pubmed.ncbi.nlm.nih.gov/19222380
https://ideas.repec.org/a/bpj/sagmbi/v8y2009i1n13.html
https://www.degruyter.com/view/j/sagmb.2009.8.1/sagmb.2009.8.1.1426/sagmb.2009.8.1.1426.xml
http://hub.hku.hk/bitstream/10722/58817/1/content.pdf
https://pubmed.ncbi.nlm.nih.gov/19222380/
https://core.ac.uk/display/37894602
https://econpapers.repec.org/RePEc:bpj:sagmbi:v:8:y:2009:i:1:n:13
http://hdl.handle.net/10722/58817

Improvement of Oligonucleotide Probe Design Criteria for Functional Gene Microarrays in Environmental Applications

Authors: Jost Liebich Song C. Chong Christopher W. Schadt et al.

Source: Applied and environmental microbiology 72, 1688-1691 (2006). doi:10.1128/AEM.72.2.1688-1691.2006

Subject Terms: 0301 basic medicine, 0303 health sciences, Oligonucleotide Probes: genetics, Base Sequence, Oligonucleotide Probes: chemistry, Nucleic Acid Hybridization, Polymerase Chain Reaction, 03 medical and health sciences, Drug Design, Environmental Microbiology, Thermodynamics, Oligonucleotide Probes, Oligonucleotide Array Sequence Analysis: statistics & numerical data, Oligonucleotide Array Sequence Analysis: methods, Oligonucleotide Array Sequence Analysis

Access URL: https://aem.asm.org/content/72/2/1688.full.pdf
https://pubmed.ncbi.nlm.nih.gov/16461729
https://www.ncbi.nlm.nih.gov/pubmed/16461729
https://pubmed.ncbi.nlm.nih.gov/16461729/
https://juser.fz-juelich.de/record/50473
http://europepmc.org/articles/PMC1392891
https://ui.adsabs.harvard.edu/abs/2006ApEnM..72.1688L/abstract
https://dialnet.unirioja.es/servlet/articulo?codigo=1453463
https://juser.fz-juelich.de/record/50473

Distinctive gene expression pattern in VH3-21 utilizing B-cell chronic lymphocytic leukemia.

Authors: Fält, Susann Merup, Mats Tobin, Gerard et al.

Source: Blood. 106(2):681-9

Subject Terms: Aged, 80 and over, Algorithms, Cell Cycle, Female, Gene Expression Profiling/statistics & numerical data, Gene Rearrangement, B-Lymphocyte, Heavy Chain, Genotype, Humans, Leukemia, B-Cell, Chronic/*genetics/*immunology/pathology, Male, Middle Aged, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Phenotype, Prognosis, Receptors, Antigen, B-Cell/metabolism, Research Support, Non-U.S. Gov't, Signal Transduction, Somatic Hypermutation, Immunoglobulin, Transcription, Genetic

File Description: print

Access URL: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-80440

Prognostic biomarkers for esophageal adenocarcinoma identified by analysis of tumor transcriptome

Contributors: Soo Mi Kim Yun-Yong Park Eun Sung Park et al.

Source: T201005442.pdf

Subject Terms: Adenocarcinoma/diagnosis, Adenocarcinoma/genetics, Adult, Aged, Biomarkers, Tumor/genetics, Cluster Analysis, Esophageal Neoplasms/diagnosis, Esophageal Neoplasms/genetics, Female, Gene Expression Profiling, Humans, Kaplan-Meier Estimate, Male, Middle Aged, Multivariate Analysis, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Osteonectin/genetics, Osteopontin/genetics, Prognosis, Proportional Hazards Models, Reverse Transcriptase Polymerase Chain Reaction

File Description: e15074

Relation: PLOS ONE; J02540; https://ir.ymlib.yonsei.ac.kr/handle/22282913/103093; T201005442; PLOS ONE, Vol.5(11) : e15074, 2010; 35679

Availability: https://ir.ymlib.yonsei.ac.kr/handle/22282913/103093
https://doi.org/10.1371/journal.pone.0015074

Improvement of Oligonucleotide Probe Design Criteria for Functional Gene Microarrays in Environmental applications

Authors: Liebich, J. Schadt, C. W. Chong, S. C. et al.

Source: Applied and environmental microbiology 72, 1688 - 1691 (2006). doi:10.1128/AEM.72.2.1688-1691.2006

Subject Terms: info:eu-repo/classification/ddc/570, Base Sequence, Drug Design, Environmental Microbiology, Nucleic Acid Hybridization, Oligonucleotide Array Sequence Analysis: methods, Oligonucleotide Array Sequence Analysis: statistics & numerical data, Oligonucleotide Probes: chemistry, Oligonucleotide Probes: genetics, Polymerase Chain Reaction, Thermodynamics, Oligonucleotide Probes

Subject Geographic: DE

Relation: info:eu-repo/semantics/altIdentifier/issn/0099-2240; info:eu-repo/semantics/altIdentifier/pmid/pmid:16461729; info:eu-repo/semantics/altIdentifier/hdl/2128/796; info:eu-repo/semantics/altIdentifier/wos/WOS:000235353100092

Availability: https://juser.fz-juelich.de/record/50473
https://juser.fz-juelich.de/search?p=id:%22PreJuSER-50473%22

Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use

Authors: Brazel, David Jiang, Yu Hughey, Jordan et al.

Contributors: Brazel, David Jiang, Yu Hughey, Jordan et al.

Source: ISSN: 0006-3223 ; Biological Psychiatry ; https://hal.science/hal-04178614 ; Biological Psychiatry, 2019, 85 (11), pp.946-955. ⟨10.1016/j.biopsych.2018.11.024⟩.

Subject Terms: Tobacco, Nicotine, Heritability, GWAS, Behavioral genetics, Alcohol, MESH: Alcohol Drinking / genetics, MESH: Alcohol Drinking / physiopathology, MESH: Phenotype, MESH: Polymorphism, Single Nucleotide / genetics, MESH: Smoking / genetics, MESH: Smoking / physiopathology, MESH: Databases, Genetic, MESH: Exome, MESH: Genetic Predisposition to Disease / genetics, MESH: Genetic Variation / physiology, MESH: Genome-Wide Association Study / statistics & numerical data, MESH: Genotype, MESH: Humans, MESH: Oligonucleotide Array Sequence Analysis / statistics & numerical data, [SDV]Life Sciences [q-bio]

Relation: info:eu-repo/semantics/altIdentifier/pmid/30679032; PUBMED: 30679032; PUBMEDCENTRAL: PMC6534468

Availability: https://hal.science/hal-04178614
https://doi.org/10.1016/j.biopsych.2018.11.024

Predicting gene function from gene expressions and ontologies.

Authors: Hvidsten, T R Komorowski, J Sandvik, A K et al.

Source: Pacific Symposium on Biocomputing. :299-310

Subject Terms: Algorithms, Cells, Cultured, Culture Media, Fibroblasts/metabolism, Gene Expression, Gene Expression Profiling/*statistics & numerical data, Humans, Models, Genetic, Oligonucleotide Array Sequence Analysis/*statistics & numerical data, RNA, Messenger/genetics/metabolism, Software

File Description: print

Access URL: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-76692

Tissue-based Alzheimer gene expression markers-comparison of multiple machine learning approaches and investigation of redundancy in small biomarker sets.

Authors: Scheubert, Lena Luštrek, Mitja Schmidt, Rainer et al.

Source: BMC bioinformatics 13(1), 266 (2012). doi:10.1186/1471-2105-13-266

Subject Terms: info:eu-repo/classification/ddc/610, Alzheimer Disease: genetics, Artificial Intelligence: statistics & numerical data, Gene Expression, Gene Expression Profiling: statistics & numerical data, Genetic Markers, Humans, Oligonucleotide Array Sequence Analysis: statistics & numerical data, Support Vector Machine, Tissue Array Analysis: statistics & numerical data

Subject Geographic: DE

Relation: info:eu-repo/semantics/altIdentifier/pmid/pmid:23066814; info:eu-repo/semantics/altIdentifier/issn/1471-2105; https://pub.dzne.de/record/136801

Availability: https://pub.dzne.de/record/136801
https://pub.dzne.de/search?p=id:%22DZNE-2020-03123%22

Bayesian ranking and selection methods using hierarchical mixture models in microarray studies.

Authors: Noma, Hisashi Matsui, Shigeyuki Omori, Takashi et al.

Contributors: Noma, Hisashi Matsui, Shigeyuki Omori, Takashi et al.

Subject Terms: Empirical Bayes, Gene expression, Hierarchical mixture models, Microarrays, Ranking and selection, Algorithms, Bayes Theorem, Biometry/methods, Breast Neoplasms/diagnosis, Breast Neoplasms/metabolism, Computer Simulation, Down-Regulation/genetics, Female, Gene Expression Profiling/statistics & numerical data, Humans, Models, Statistical, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Prognosis, Recurrence, Sensitivity and Specificity, Up-Regulation/genetics

File Description: application/pdf

Relation: http://hdl.handle.net/2433/139478; AA1185180X; Biostatistics; 11; 281; 289

Availability: http://hdl.handle.net/2433/139478

Identification of significant regional genetic variations using continuous CNV values in aCGH data

Contributors: Ki-Yeol Kim Gui Youn Lee Jin Kim et al.

Subject Terms: Analysis of Variance, Chromosome Aberrations, Colorectal Neoplasms/genetics, Comparative Genomic Hybridization/methods, Comparative Genomic Hybridization/statistics & numerical data, DNA/genetics, Female, Gene Dosage, Genetic Variation, Genome, Human/genetics, Genomics, Humans, Intestinal Mucosa/cytology, Leukocytes, Mononuclear/cytology, Male, Models, Statistical, Neoplasms, Oligonucleotide Array Sequence Analysis/methods, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Sequence Analysis, DNA, Array CGH, Genomic variations, Systematic aberrations, Shifted ANOVA, Chromosomal region, psy

Relation: https://ir.ymlib.yonsei.ac.kr/handle/22282913/104621

Availability: https://ir.ymlib.yonsei.ac.kr/handle/22282913/104621

Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer.

Authors: Daemen, Anneleen Gevaert, Olivier De Bie, Tijl et al.

Contributors: Daemen, Anneleen Gevaert, Olivier De Bie, Tijl et al.

Source: Pacific Symposium on Biocomputing 2007, Vol. 13, p. 166-177 (2008)

Subject Terms: Algorithms, Antibodies, Monoclonal - therapeutic use, Humans, Least-Squares Analysis, Models, Statistical, Oligonucleotide Array Sequence Analysis - statistics & numerical data, Proteomics - statistics & numerical data, Rectal Neoplasms - genetics, metabolism, therapy, Antineoplastic Agents - therapeutic use, Artificial Intelligence, Combined Modality Therapy, Computational Biology, Data Interpretation, Databases, Factual, Deoxycytidine - analogs & derivatives, therapeutic use, Fluorouracil - analogs & derivatives

Relation: boreal:88332; http://hdl.handle.net/2078.1/88332; info:pmid/18229684

Availability: http://hdl.handle.net/2078.1/88332

SemBiosphere: a semantic web approach to recommending microarray clustering services.

Authors: Yip, KY Qi, P Schultz, M et al.

Subject Terms: Software, Semantics, Programming Languages, Oligonucleotide Array Sequence Analysis - Statistics & Numerical Data, Internet, Computational Biology, Cluster Analysis, Algorithms

Relation: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing; 199; 188; http://hdl.handle.net/10722/152385

Availability: http://hdl.handle.net/10722/152385

Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.

Authors: Stauffer, Y. Theiler, G. Sperisen, P. et al.

Source: Cancer Immunity, vol. 4, pp. 2

Subject Terms: Chromosome Mapping, Cluster Analysis, DNA Probes/genetics, DNA, Viral/genetics, Endogenous Retroviruses/genetics, Evolution, Molecular, Expressed Sequence Tags, Female, Gene Expression Profiling/methods, Gene Expression Profiling/statistics & numerical data, Genes, Genome, Human, Viral, Humans, Male, Neoplasms/genetics, Neoplasms/virology, Oligonucleotide Array Sequence Analysis/methods, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Open Reading Frames/genetics, Organ Specificity/genetics, Proviruses/genetics, Species Specificity, Viral Structural Proteins/genetics

Relation: info:eu-repo/semantics/altIdentifier/pmid/14871062; info:eu-repo/semantics/altIdentifier/eissn/1424-9634; https://serval.unil.ch/notice/serval:BIB_2FE0266F92B3

Availability: https://serval.unil.ch/notice/serval:BIB_2FE0266F92B3

Bayesian ranking and selection methods using hierarchical mixture models in microarray studies.

Authors: Matsui, Shigeyuki Omori, Takashi Sato, Tosiya et al.

Index Terms: Empirical Bayes, Gene expression, Hierarchical mixture models, Microarrays, Ranking and selection, Algorithms, Bayes Theorem, Biometry/methods, Breast Neoplasms/diagnosis, Breast Neoplasms/metabolism, Computer Simulation, Down-Regulation/genetics, Female, Gene Expression Profiling/statistics & numerical data, Humans, Models, Statistical, Oligonucleotide Array Sequence Analysis/statistics & numerical data, Prognosis, Recurrence, Sensitivity and Specificity, Up-Regulation/genetics, Journal Article., AM.

URL: http://hdl.handle.net/2433/139478
https://doi.org/10.1093/biostatistics/kxp047
http://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/139478/1/kxp047.pdf
19946026

Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer.

Authors: UCL - MD/MINT - Département de médecine interne UCL - (SLuc) Unité d'oncologie médicale UCL - (SLuc) Centre du cancer et al.

Source: Pacific Symposium on Biocomputing 2007, Vol. 13, p. 166-177 (2008)

Index Terms: Algorithms, Antibodies, Monoclonal - therapeutic use, Humans, Least-Squares Analysis, Models, Statistical, Oligonucleotide Array Sequence Analysis - statistics & numerical data, Proteomics - statistics & numerical data, Rectal Neoplasms - genetics, metabolism, therapy, Antineoplastic Agents - therapeutic use, Artificial Intelligence, Combined Modality Therapy, Computational Biology, Data Interpretation, Statistical, Databases, Factual, Deoxycytidine - analogs & derivatives, therapeutic use, Fluorouracil - analogs & derivatives, therapeutic use, info:eu-repo/semantics/article

URL: http://hdl.handle.net/2078.1/88332