Search Results - "Oligonucleotide Array Sequence Analysis"

Development and validation of a high-density SNP chip tailored for genomic analysis in Indian backyard chickens.

Authors: Vijh RK Arora R Sharma U et al.

Source: British poultry science [Br Poult Sci] 2025 Dec; Vol. 66 (6), pp. 758-766. Date of Electronic Publication: 2025 May 28.

Publication Type: Journal Article; Validation Study

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 15740290R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1466-1799 (Electronic) Linking ISSN: 00071668 NLM ISO Abbreviation: Br Poult Sci Subsets: MEDLINE

MeSH Terms: Chickens*/genetics , Polymorphism, Single Nucleotide* , Genomics*/methods , Oligonucleotide Array Sequence Analysis*/veterinary , Oligonucleotide Array Sequence Analysis*/methods, Animals ; India ; Genotype ; Genetic Variation ; Breeding

A barcode-specific immobilization interface for microfluidics-assisted uniform spatially barcoded microarray analysis.

Authors: Tian S Li Y Yao J et al.

Source: The Analyst [Analyst] 2025 Oct 06; Vol. 150 (20), pp. 4586-4596. Date of Electronic Publication: 2025 Oct 06.

Publication Type: Journal Article

Journal Info: Publisher: Royal Society of Chemistry Country of Publication: England NLM ID: 0372652 Publication Model: Electronic Cited Medium: Internet ISSN: 1364-5528 (Electronic) Linking ISSN: 00032654 NLM ISO Abbreviation: Analyst Subsets: MEDLINE

MeSH Terms: Oligonucleotide Array Sequence Analysis*/methods , Oligonucleotide Array Sequence Analysis*/instrumentation , Microfluidic Analytical Techniques*/methods , Microfluidic Analytical Techniques*/instrumentation, Animals ; Mice ; RNA, Messenger/analysis ; RNA, Messenger/genetics ; DNA Probes/chemistry ; DNA Probes/genetics ; Liver/metabolism ; Liver/chemistry

Unveiling complex patterns: An information-theoretic approach to high-order behaviors in microarray data.

Authors: Lacalamita A Monaco A Serino G et al.

Source: PloS one [PLoS One] 2025 Nov 13; Vol. 20 (11), pp. e0336379. Date of Electronic Publication: 2025 Nov 13 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Information Theory* , Oligonucleotide Array Sequence Analysis*/methods, Humans ; Liver Neoplasms/genetics ; Carcinoma, Hepatocellular/genetics ; Autism Spectrum Disorder/genetics ; Gene Expression Profiling ; Algorithms

Multimodal feature-optimized approaches for cancer classification using microarray gene expression analysis.

Authors: Jayaseeli JDD Saranya SS Lakshmi K et al.

Source: Scientific reports [Sci Rep] 2025 Nov 12; Vol. 15 (1), pp. 39685. Date of Electronic Publication: 2025 Nov 12.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH Terms: Neoplasms*/genetics , Neoplasms*/classification , Neoplasms*/diagnosis , Gene Expression Profiling*/methods , Oligonucleotide Array Sequence Analysis*/methods, Humans ; Artificial Intelligence ; Algorithms ; Gene Expression Regulation, Neoplastic ; Genomics/methods ; Computational Biology/methods

Integrating image processing with deep convolutional neural networks for gene selection and cancer classification using microarray data.

Authors: Zhang Y Chen J Zhang C

Source: Scientific reports [Sci Rep] 2025 Nov 11; Vol. 15 (1), pp. 39465. Date of Electronic Publication: 2025 Nov 11.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH Terms: Neoplasms*/genetics , Neoplasms*/classification , Neural Networks, Computer* , Image Processing, Computer-Assisted*/methods , Oligonucleotide Array Sequence Analysis*/methods, Humans ; Gene Expression Profiling/methods ; Deep Learning ; Gene Expression Regulation, Neoplastic ; Convolutional Neural Networks

Importance of single nucleotide polymorphism microarray in prenatal diagnosis.

Authors: Feng Z Chen Y Yi F et al.

Source: Advances in clinical and experimental medicine : official organ Wroclaw Medical University [Adv Clin Exp Med] 2025 Nov; Vol. 34 (11), pp. 1929-1935.

Publication Type: Journal Article

Journal Info: Publisher: Wroclaw Medical University Country of Publication: Poland NLM ID: 101138582 Publication Model: Print Cited Medium: Print ISSN: 1899-5276 (Print) Linking ISSN: 18995276 NLM ISO Abbreviation: Adv Clin Exp Med Subsets: MEDLINE

MeSH Terms: Polymorphism, Single Nucleotide* , Prenatal Diagnosis*/methods , Oligonucleotide Array Sequence Analysis*/methods , Congenital Abnormalities*/diagnosis , Congenital Abnormalities*/genetics , Microarray Analysis*/methods, Humans ; Female ; Pregnancy ; Karyotyping ; Adult ; DNA Copy Number Variations ; Aneuploidy

Rapid screening of mutations for second-line-drug-resistant genes in Mycobacterium tuberculosis culture isolates by in-house developed DNA bio-chip.

Authors: Jain B Kulkarni S Baghel NS

Source: European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology [Eur J Clin Microbiol Infect Dis] 2025 Nov; Vol. 44 (11), pp. 2645-2654. Date of Electronic Publication: 2025 Jul 29.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 8804297 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1435-4373 (Electronic) Linking ISSN: 09349723 NLM ISO Abbreviation: Eur J Clin Microbiol Infect Dis Subsets: MEDLINE

MeSH Terms: Mycobacterium tuberculosis*/genetics , Mycobacterium tuberculosis*/drug effects , Mycobacterium tuberculosis*/isolation & purification , Mutation* , Tuberculosis, Multidrug-Resistant*/microbiology , Tuberculosis, Multidrug-Resistant*/diagnosis , Oligonucleotide Array Sequence Analysis*/methods , Drug Resistance, Multiple, Bacterial*/genetics, Humans ; Antitubercular Agents/pharmacology ; Microbial Sensitivity Tests ; Sensitivity and Specificity ; India ; DNA, Bacterial/genetics

Hidden network preserved in Slide-tags data allows reference-free spatial reconstruction.

Authors: Dahlberg SK Bonet DF Franzén L et al.

Source: Nature communications [Nat Commun] 2025 Oct 31; Vol. 16 (1), pp. 9652. Date of Electronic Publication: 2025 Oct 31.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

MeSH Terms: Gene Expression Profiling*/methods , Oligonucleotide Array Sequence Analysis*/methods, Humans ; Animals ; Mice ; Transcriptome

Development and validation of a 70K SNP genotyping array for Atlantic halibut (Hippoglossus hippoglossus).

Authors: Sinani VK Wilson RC Nome T et al.

Source: BMC genomics [BMC Genomics] 2025 Oct 16; Vol. 26 (1), pp. 924. Date of Electronic Publication: 2025 Oct 16.

Publication Type: Journal Article; Validation Study

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

MeSH Terms: Polymorphism, Single Nucleotide* , Flounder*/genetics , Genotyping Techniques*/methods , Oligonucleotide Array Sequence Analysis*/methods, Animals ; Female ; Male ; Genotype ; Whole Genome Sequencing

Diagnostic performance of chromosomal microarray and whole exome sequencing in fetal structural anomalies: a single-center retrospective study.

Authors: Özer L Aktuna S Ünsal E

Source: BMC pregnancy and childbirth [BMC Pregnancy Childbirth] 2025 Oct 06; Vol. 25 (1), pp. 1029. Date of Electronic Publication: 2025 Oct 06.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100967799 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2393 (Electronic) Linking ISSN: 14712393 NLM ISO Abbreviation: BMC Pregnancy Childbirth Subsets: MEDLINE

MeSH Terms: Exome Sequencing*/methods , Prenatal Diagnosis*/methods , Microarray Analysis*/methods , Congenital Abnormalities*/genetics , Congenital Abnormalities*/diagnosis , Oligonucleotide Array Sequence Analysis*, Humans ; Retrospective Studies ; Female ; Pregnancy ; Ultrasonography, Prenatal ; DNA Copy Number Variations ; Adult ; Genetic Testing/methods ; Fetus/abnormalities

Addressing wide-data studies of gene expression microarrays with the Relevance Feature and Vector Machine.

Authors: Belenguer-Llorens A Sevilla-Salcedo C Parrado-Hernández E et al.

Source: Computers in biology and medicine [Comput Biol Med] 2025 Oct; Vol. 197 (Pt A), pp. 110985. Date of Electronic Publication: 2025 Sep 02.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

MeSH Terms: Support Vector Machine* , Oligonucleotide Array Sequence Analysis*/methods , Gene Expression Profiling*/methods, Humans ; Databases, Genetic ; Bayes Theorem ; Algorithms

Research on a single molecule signal amplification strategy for high risk HPV mRNA based on fluorescent microarray platform.

Authors: Zou M Abudushalamu G Yang C et al.

Source: Talanta [Talanta] 2026 Jan 01; Vol. 297 (Pt A), pp. 128534. Date of Electronic Publication: 2025 Jul 08.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2984816R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-3573 (Electronic) Linking ISSN: 00399140 NLM ISO Abbreviation: Talanta Subsets: MEDLINE

MeSH Terms: RNA, Messenger*/genetics , RNA, Messenger*/analysis , RNA, Viral*/genetics , RNA, Viral*/analysis , Human papillomavirus 16*/genetics , Human papillomavirus 16*/isolation & purification , Papillomavirus Infections*/diagnosis , Papillomavirus Infections*/virology , Human papillomavirus 18*/genetics , Human papillomavirus 18*/isolation & purification , Oligonucleotide Array Sequence Analysis*/methods, Humans ; Fluorescence ; Female ; Fluorescent Dyes/chemistry ; Oncogene Proteins, Viral/genetics

Measuring technical variability in illumina DNA methylation microarrays.

Authors: Butler AA Kras JJ Chwalek KP et al.

Source: PloS one [PLoS One] 2025 Jul 11; Vol. 20 (7), pp. e0326337. Date of Electronic Publication: 2025 Jul 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: DNA Methylation* , Oligonucleotide Array Sequence Analysis*/methods , Oligonucleotide Array Sequence Analysis*/standards, Humans ; CpG Islands ; Reproducibility of Results

Quality control checkpoints for high throughput DNA methylation measurement using the human MethylationEPICv1 array: application to formalin-fixed paraffin embedded prostate tissue.

Authors: O'Reilly RL Hammet F O'Callaghan N et al.

Source: BMC research notes [BMC Res Notes] 2025 Jul 09; Vol. 18 (1), pp. 280. Date of Electronic Publication: 2025 Jul 09.

Publication Type: Journal Article

Journal Info: Publisher: Biomed Central Country of Publication: England NLM ID: 101462768 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-0500 (Electronic) Linking ISSN: 17560500 NLM ISO Abbreviation: BMC Res Notes Subsets: MEDLINE

MeSH Terms: DNA Methylation* , Prostatic Neoplasms*/genetics , Prostatic Neoplasms*/pathology , Prostate*/pathology , Prostate*/metabolism , Oligonucleotide Array Sequence Analysis*/methods , Oligonucleotide Array Sequence Analysis*/standards, Humans ; Male ; Paraffin Embedding ; Quality Control ; Formaldehyde/chemistry ; Tissue Fixation ; Reproducibility of Results

ACG-SFE: Adaptive cluster-guided simple, fast, and efficient feature selection for high-dimensional microarray data in binary classification.

Authors: Tye YW Chew X Yusof UK et al.

Source: PloS one [PLoS One] 2025 Sep 08; Vol. 20 (9), pp. e0331089. Date of Electronic Publication: 2025 Sep 08 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Oligonucleotide Array Sequence Analysis*/methods , Computational Biology*/methods, Cluster Analysis ; Algorithms ; Humans ; Gene Expression Profiling

Application of DNA microarray technology for the simultaneous identification of agricultural Frankliniella thrips (Thysanoptera: Thripidae).

Authors: Boonmee W Pham TH Yahaya ZS et al.

Source: Journal of economic entomology [J Econ Entomol] 2025 Aug 29; Vol. 118 (4), pp. 1889-1900.

Publication Type: Journal Article; Evaluation Study

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 2985127R Publication Model: Print Cited Medium: Internet ISSN: 1938-291X (Electronic) Linking ISSN: 00220493 NLM ISO Abbreviation: J Econ Entomol Subsets: MEDLINE

MeSH Terms: Thysanoptera*/genetics , Thysanoptera*/classification , Oligonucleotide Array Sequence Analysis*/methods, Animals ; Species Specificity ; Nymph/genetics ; Nymph/classification ; DNA, Ribosomal Spacer/genetics

A Comparative Study of Medium-Coverage Genome Sequencing and SNP Array Technology in Identifying Chromosomal Abnormalities to Advance Prenatal and Postnatal Diagnosis.

Authors: Pang J Zhou L Hu J et al.

Source: The Journal of molecular diagnostics : JMD [J Mol Diagn] 2025 Aug; Vol. 27 (8), pp. 736-746. Date of Electronic Publication: 2025 Jun 06.

Publication Type: Journal Article; Comparative Study

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 100893612 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1943-7811 (Electronic) Linking ISSN: 15251578 NLM ISO Abbreviation: J Mol Diagn Subsets: MEDLINE

MeSH Terms: Polymorphism, Single Nucleotide* , Prenatal Diagnosis*/methods , Chromosome Aberrations* , Whole Genome Sequencing*/methods , Chromosome Disorders*/diagnosis , Chromosome Disorders*/genetics , Oligonucleotide Array Sequence Analysis*/methods, Humans ; DNA Copy Number Variations ; Female ; Pregnancy ; Mosaicism ; Sensitivity and Specificity ; Genome, Human ; High-Throughput Nucleotide Sequencing/methods ; Loss of Heterozygosity

Engineered transcription factor-binding arrays for DNA-based gene expression control in mammalian cells.

Authors: Zouein A Lende-Dorn B Galloway KE et al.

Source: Trends in biotechnology [Trends Biotechnol] 2025 Aug; Vol. 43 (8), pp. 2029-2048. Date of Electronic Publication: 2025 Jun 09.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Science Publishers Country of Publication: England NLM ID: 8310903 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-3096 (Electronic) Linking ISSN: 01677799 NLM ISO Abbreviation: Trends Biotechnol Subsets: MEDLINE

MeSH Terms: Transcription Factors*/metabolism , Transcription Factors*/genetics , DNA*/genetics , DNA*/metabolism , Gene Expression Regulation* , Oligonucleotide Array Sequence Analysis*/methods, Humans ; Animals ; Plasmids/genetics ; Binding Sites

Customized Chromosomal Microarrays for Neurodevelopmental Disorders.

Authors: Rincic M Brecevic L Liehr T et al.

Source: Genes [Genes (Basel)] 2025 Jul 24; Vol. 16 (8). Date of Electronic Publication: 2025 Jul 24.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

MeSH Terms: Neurodevelopmental Disorders*/genetics , Neurodevelopmental Disorders*/diagnosis , Oligonucleotide Array Sequence Analysis*/methods , Autism Spectrum Disorder*/genetics, Humans ; DNA Copy Number Variations/genetics ; Female ; Child ; Male ; Child, Preschool ; Gene Regulatory Networks ; Adolescent ; Protein Interaction Maps/genetics ; Intellectual Disability/genetics

A Novel Features-Driven Augmentation of DNA Methylation Microarrays to Enhance Meningioma Brain Tumors Classification using Transformer models.

Authors: Roozbehi A Turner C Marubayashi A et al.

Source: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference [Annu Int Conf IEEE Eng Med Biol Soc] 2025 Jul; Vol. 2025, pp. 1-4.

Publication Type: Journal Article

Journal Info: Publisher: [IEEE] Country of Publication: United States NLM ID: 101763872 Publication Model: Print Cited Medium: Internet ISSN: 2694-0604 (Electronic) Linking ISSN: 23757477 NLM ISO Abbreviation: Annu Int Conf IEEE Eng Med Biol Soc Subsets: MEDLINE

MeSH Terms: Meningioma*/genetics , Meningioma*/classification , Meningioma*/diagnosis , DNA Methylation*/genetics , Oligonucleotide Array Sequence Analysis*/methods , Brain Neoplasms*/genetics , Brain Neoplasms*/classification , Brain Neoplasms*/diagnosis , Meningeal Neoplasms*/genetics , Meningeal Neoplasms*/classification , Meningeal Neoplasms*/diagnosis, Humans ; Algorithms