Search Results - "Microbial co-occurrence network"

Differential regulation of soil microecology in crop rotation systems of maize, seed pumpkin, and processing tomato

Authors: Xingxing Liu Xuyuan Li Menglei Feng et al.

Source: Frontiers in Microbiology, Vol 16 (2025)

Subject Terms: processing tomato, crop rotation, enzyme activity, microbial community diversity, microbial co-occurrence network, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1640980/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/36662f862d4145dfab0b8a8f4e1ba3d0

Effects of Veratrum nigrum expansion on soil microbial community structure in inner Mongolian mountain steppe

Authors: Bo Pang Hao Zhang Tong Liu et al.

Source: Frontiers in Microbiology, Vol 16 (2025)

Subject Terms: bacteria, expansion, fungi, microbial co-occurrence network, Veratrum nigrum, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1662400/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/f7d3596d52704225bb74379dc821be48

Management Methods and Duration Induces Changes in Soil Microbial Communities of Carya cathayensis var. dabeishansis Forests

Authors: Cheng Huang Hua Liu Shu‐Yi‐Dan Zhou et al.

Source: Ecology and Evolution, Vol 15, Iss 9, Pp n/a-n/a (2025)

Subject Terms: Carya cathayensis var. dabeishansis, forest management, land degradation, microbial community assembly, microbial co‐occurrence network, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7758

Access URL: https://doaj.org/article/e118489f72e24b0ca269db23b8bb0dfa

Tillage Effects on Bacterial Community Structure and Ecology in Seasonally Frozen Black Soils

Authors: Bin Liu Zhenjiang Si Yan Huang et al.

Source: Agriculture, Vol 15, Iss 20, p 2132 (2025)

Subject Terms: seasonal freeze–thaw, tillage practices, bacterial community, microbial co-occurrence network, microbial assembly, Agriculture (General), S1-972

File Description: electronic resource

Relation: https://www.mdpi.com/2077-0472/15/20/2132; https://doaj.org/toc/2077-0472

Access URL: https://doaj.org/article/c8cb9b1b29e64e698696a4c56174f174

Soil microbial networks mediate long-term effects of nitrogen fertilization on ecosystem multiservices

Authors: Zhang, Yaodan Wang, Ying Zhou, Guiyao et al.

Contributors: Zhang, Yaodan Wang, Ying Zhou, Guiyao et al.

Source: Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)

Subject Terms: Mineral protection, Nitrogen deposition and input, Soil function, Ecosystem services, Ecological cluster, Network complexity, Microbial co-occurrence network

Access URL: http://hdl.handle.net/10261/399167

A novel computational approach for the mining of signature pathways using species co-occurrence networks in gut microbiomes

Authors: Suyeon Kim Ishwor Thapa Hesham Ali

Source: BMC Microbiology, Vol 24, Iss S1, Pp 1-12 (2024)

Subject Terms: Microbial signature, Microbial co-occurrence network, Network analysis, Enriched pathways comparison, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/957674e43b494395900626d20fefa5ce

Decoupled fungal and bacterial functional responses to biochar amendment drive rhizosphere priming effect on soil organic carbon mineralization

Authors: Chao He Jean Damascene Harindintwali Hao Cui et al.

Source: Biochar, Vol 6, Iss 1, Pp 1-24 (2024)

Subject Terms: Ecoenzymatic activities, Functional genes, Functional traits, Microbial co-occurrence network, Microbial guilds, Taxonomic traits, Environmental sciences, GE1-350, Agriculture

File Description: electronic resource

Relation: https://doaj.org/toc/2524-7867

Access URL: https://doaj.org/article/7bcaf6886a4148b7b8c39bfe4686bcb8

Impacts of Lead and Nanoplastic Co-Exposure on Decomposition, Microbial Diversity, and Community Assembly Mechanisms in Karst Riverine Miscanthus Litter

Authors: Peijian Chen Tianjiao Mei Xingbing He et al.

Source: Microorganisms, Vol 13, Iss 9, p 2172 (2025)

Subject Terms: lead, nanoplastic, mass loss, microbial diversity, microbial community assembly, microbial co-occurrence network, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/13/9/2172; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/efd13c464bc74a86be93f97af5d521e9

Precipitation Alleviates Adverse Effects of Nitrogen and Phosphorus Enrichment on Soil Microbial Co-Occurrence Network Complexity and Stability in Karst Shrubland

Authors: Jiangnan Li Jie Zhao Xionghui Liao et al.

Source: Microorganisms, Vol 13, Iss 9, p 2012 (2025)

Subject Terms: karst shrubland, microbial co-occurrence network, nitrogen addition, phosphorous addition, soil microorganism, water addition, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/13/9/2012; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/1e976a0126064fb586f6aefd496eb634

Fermentation Regulation: Revealing Bacterial Community Structure, Symbiotic Networks to Function and Pathogenic Risk in Corn Stover Silage

Authors: Zhumei Du Shaojuan Cui Yifan Chen et al.

Source: Agriculture, Vol 15, Iss 16, p 1791 (2025)

Subject Terms: crop by-product, microbial co-occurrence network, pathogen assessment, regulation mechanisms, silage function prediction, Agriculture (General), S1-972

File Description: electronic resource

Relation: https://www.mdpi.com/2077-0472/15/16/1791; https://doaj.org/toc/2077-0472

Access URL: https://doaj.org/article/77cb5c6a1ff6471786c635c106291456

Priority Effect of Endophyte Community in Newly Fallen Leaves of Quercus acutissima Carruth. on Litter Decomposition and Saprotrophic Microbial Community

Authors: Dongmei Yang Yonghui Lin Zaihua He et al.

Source: Forests ; Volume 16 ; Issue 2 ; Pages: 249

Subject Terms: microbial community assembly, microbial co-occurrence network, extracellular enzyme stoichiometry, microbial diversity, microbial source tracking

Subject Geographic: agris

File Description: application/pdf

Relation: Forest Soil; https://dx.doi.org/10.3390/f16020249

Availability: https://doi.org/10.3390/f16020249

Priority Colonization of Endophytic Fungal Strains Drives Litter Decomposition and Saprotroph Assembly via Functional Trait Selection in Karst Oak Forests

Authors: Dongmei Yang Zaihua He Yonghui Lin et al.

Source: Microorganisms, Vol 13, Iss 5, p 1066 (2025)

Subject Terms: endophyte, mass loss, microbial diversity, microbial community assembly, microbial co-occurrence network, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/13/5/1066; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/aebdebc7041b4084b8ba73a98c74b94f

Cleaner anaerobic fermentation and greenhouse gas reduction of crop straw

Authors: Zhumei Du Andressa Nakagawa Jiachen Fang et al.

Source: Microbiol Spectr
Microbiology Spectrum, Vol 12, Iss 7 (2024)

Subject Terms: Crops, Agricultural, 0301 basic medicine, cleaner anaerobic fermentation, microbial co-occurrence network, Microbiology, crop straw resource, 12. Responsible consumption, Greenhouse Gases, 03 medical and health sciences, Lactobacillales, 11. Sustainability, Anaerobiosis, sustainable animal production, greenhouse gas emission source, 2. Zero hunger, Silage, 0303 health sciences, Microbiota, Oryza, Carbon Dioxide, 15. Life on land, QR1-502, 6. Clean water, 13. Climate action, Fermentation, Research Article

Access URL: https://pubmed.ncbi.nlm.nih.gov/38832787
https://doaj.org/article/0c3c9e9e0f08468f83210b838288bf12

Thriving beneath olive trees: The influence of organic farming on microbial communities

Authors: Nuria M. Wentzien Antonio J. Fernández-González Pablo J. Villadas et al.

Contributors: Nuria M. Wentzien Antonio J. Fernández-González Pablo J. Villadas et al.

Source: Comput Struct Biotechnol J
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
Computational and Structural Biotechnology Journal, Vol 21, Iss, Pp 3575-3589 (2023)

Subject Terms: 2. Zero hunger, manure management, 15. Life on land, microbial ecology, Oleae europaea, Microbial ecology, 13. Climate action, Rhizosphere, Manure amendment, Root endosphere, rhizosphere, TP248.13-248.65, Microbial co-occurrence network, Biotechnology, Research Article

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37520283
http://hdl.handle.net/10261/342618
https://doaj.org/article/96094eb37d3146d986efd2d28bb4cceb

Microbial network and fermentation modulation of Napier grass and sugarcane top silage in southern Africa

Authors: Zhumei Du Seishi Yamasaki Tetsuji Oya et al.

Source: Microbiol Spectr
Microbiology Spectrum, Vol 12, Iss 1 (2024)

Subject Terms: microbial co-occurrence network, Livestock, Microbial population biology, Microbiology, Africa, Southern, 12. Responsible consumption, Agricultural and Biological Sciences, Food science, lactic acid bacteria screening, Lactobacillales, PacBio SMRT, Biochemistry, Genetics and Molecular Biology, Genetics, Animals, RNA Sequencing Data Analysis, Molecular Biology, Biology, 2. Zero hunger, Silage, fermentation modulation, Bacteria, Probiotics and Prebiotics, Life Sciences, Lactic acid, 15. Life on land, Diversity and Function of Gut Microbiome, QR1-502, Agronomy, 6. Clean water, Saccharum, Lactobacillus, Microbial inoculant, Microbial Communities, tropical silage, FOS: Biological sciences, Fermentation, Research Article, Food Science, Lactobacillus plantarum

Access URL: https://pubmed.ncbi.nlm.nih.gov/38084975
https://doaj.org/article/b2ab42813ea94de2aced3d998f69a471

Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention

Authors: Julia Katharina Kurth Martin Albrecht Karin Glaser et al.

Source: Front Microbiol
Frontiers in Microbiology, Vol 14 (2023)
Kurth, J K, Albrecht, M, Glaser, K, Karsten, U, Vestergaard, G, Armbruster, M, Kublik, S, Schmid, C A O, Schloter, M & Schulz, S 2023, ' Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention ', Frontiers in Microbiology, vol. 14, 1169958 . https://doi.org/10.3389/fmicb.2023.1169958

Subject Terms: 2. Zero hunger, 0301 basic medicine, microbial co-occurrence network, 0303 health sciences, amplicon, 15. Life on land, Cyanobacteria, biocrust, Microbiology, hotspot, managed site, mesophilic region, QR1-502, ddc, 03 medical and health sciences, 13. Climate action

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/37520365
https://doaj.org/article/c0a89d98ec2144c785c56617b958e670
https://curis.ku.dk/ws/files/362689194/fmicb_14_1169958.pdf
https://mediatum.ub.tum.de/1720355

Microplastics alter soil structure and microbial community composition

Authors: Lanfang Han Liying Chen Yanfang Feng et al.

Source: Environment International, Vol 185, Iss , Pp 108508- (2024)

Subject Terms: Microplastic contamination, Soil aggregation, Bacterial community structure, Microbial co-occurrence network, Soil health, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412024000941; https://doaj.org/toc/0160-4120

Access URL: https://doaj.org/article/9bac8ea9d3a14d279bd22bb0f6524d2f

Depth-dependent responses of soil bacterial communities to salinity in an arid region

Authors: Dong, Xinping Zhang, Zhihao Lu, Yan et al.

Subject Terms: Desert ecosystem, Microbial phenotype, Soil salinity, Microbial co-occurrence network

Relation: Science of the total environment; Vol. 949 (November 2024), art. 175129; https://ddd.uab.cat/record/312833; urn:10.1016/j.scitotenv.2024.175129; urn:oai:ddd.uab.cat:312833

Availability: https://ddd.uab.cat/record/312833

Microplastics alter soil structure and microbial community composition

Authors: Han, Lanfang Chen, Liying Feng, Yanfang et al.

Subject Terms: Microplastic contamination, Soil aggregation, Bacterial community structure, Microbial co-occurrence network, Soil health, ddc:570

File Description: 10 Seiten; application/pdf

Availability: https://refubium.fu-berlin.de/handle/fub188/43636
https://doi.org/10.17169/refubium-43351
https://doi.org/10.1016/j.envint.2024.108508

A Novel Computational Approach for the Mining of Signature Pathways Using Species Co-occurrence Networks in Gut Microbiomes

Authors: Suyeon Kim Ishwor Thapa Hesham Ali

Source: BMC Microbiol
BMC Microbiology, Vol 24, Iss S1, Pp 1-12 (2024)

Subject Terms: Bacteria, Research, Computational Biology, Inflammatory Bowel Diseases, Microbiology, QR1-502, Gastrointestinal Microbiome, 3. Good health, Enriched pathways comparison, RNA, Ribosomal, 16S, Humans, Metagenome, Data Mining, Network analysis, Metagenomics, Microbial signature, Microbial co-occurrence network

Access URL: https://pubmed.ncbi.nlm.nih.gov/39574009
https://doaj.org/article/957674e43b494395900626d20fefa5ce