Search Results - "Metadata"

Metadata: how data about data affects patient safety in anesthesia.

Authors: Tewfik G Chaudhry F Rodriguez-Correa D et al.

Source: Current opinion in anaesthesiology [Curr Opin Anaesthesiol] 2025 Dec 01; Vol. 38 (6), pp. 786-793. Date of Electronic Publication: 2025 Sep 19.

Publication Type: Journal Article; Review

Journal Info: Publisher: Lippincott Williams & Wilkins Country of Publication: United States NLM ID: 8813436 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1473-6500 (Electronic) Linking ISSN: 09527907 NLM ISO Abbreviation: Curr Opin Anaesthesiol Subsets: MEDLINE

MeSH Terms: Patient Safety*/standards , Anesthesia*/adverse effects , Anesthesia*/methods , Anesthesia*/standards , Anesthesiology*/standards , Anesthesiology*/methods , Metadata*/standards, Humans ; Electronic Health Records/standards ; Decision Support Systems, Clinical ; Data Accuracy ; Documentation

Identifying Biomedical Entities for Datasets in Scientific Articles: 4-Step Cache-Augmented Generation Approach Using GPT-4o and PubTator 3.0.

Authors: Giuliani C Benadi G Engel F et al.

Source: JMIR formative research [JMIR Form Res] 2025 Nov 20; Vol. 9, pp. e73822. Date of Electronic Publication: 2025 Nov 20.

Publication Type: Journal Article

Journal Info: Publisher: JMIR Publications Country of Publication: Canada NLM ID: 101726394 Publication Model: Electronic Cited Medium: Internet ISSN: 2561-326X (Electronic) Linking ISSN: 2561326X NLM ISO Abbreviation: JMIR Form Res Subsets: MEDLINE

MeSH Terms: Metadata* , Biomedical Research* , Datasets as Topic* , Data Mining*/methods , Information Storage and Retrieval*/methods, Humans

Why new metadata? Avenues for improvement in the describing and storing of restoration monitoring data.

Authors: Deschler A Gaucherand S Gouraud V et al.

Source: Environmental monitoring and assessment [Environ Monit Assess] 2025 Nov 05; Vol. 197 (12), pp. 1301. Date of Electronic Publication: 2025 Nov 05.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Country of Publication: Netherlands NLM ID: 8508350 Publication Model: Electronic Cited Medium: Internet ISSN: 1573-2959 (Electronic) Linking ISSN: 01676369 NLM ISO Abbreviation: Environ Monit Assess Subsets: MEDLINE

MeSH Terms: Environmental Monitoring*/methods , Environmental Monitoring*/standards , Metadata*/standards , Environmental Restoration and Remediation*/statistics & numerical data, France

Dementia Data Landscape 1. Cohorts.

Authors: Morgan A Durkin C Tari B et al.

Source: Alzheimer's & dementia : the journal of the Alzheimer's Association [Alzheimers Dement] 2025 Nov; Vol. 21 (11), pp. e70901.

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons, Ltd Country of Publication: United States NLM ID: 101231978 Publication Model: Print Cited Medium: Internet ISSN: 1552-5279 (Electronic) Linking ISSN: 15525260 NLM ISO Abbreviation: Alzheimers Dement Subsets: MEDLINE

MeSH Terms: Dementia*/epidemiology , Metadata*, Humans ; Cohort Studies

Building a framework for reproducibility: the case for standardized data reporting and metadata integration in zebrafish research.

Authors: Ngu MS Toro S Burger A et al.

Source: Disease models & mechanisms [Dis Model Mech] 2025 Nov 01; Vol. 18 (11). Date of Electronic Publication: 2025 Nov 18.

Publication Type: Editorial; Journal Article

Journal Info: Publisher: Company of Biologists Ltd Country of Publication: England NLM ID: 101483332 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1754-8411 (Electronic) Linking ISSN: 17548403 NLM ISO Abbreviation: Dis Model Mech Subsets: MEDLINE

MeSH Terms: Zebrafish* , Metadata*/standards, Animals ; Reproducibility of Results

Quantifying annotation-driven bias in alternative splicing from EGAP metadata.

Authors: de la Fuente R Díaz-Villanueva W Arnau V et al.

Source: NAR genomics and bioinformatics [NAR Genom Bioinform] 2025 Nov 11; Vol. 7 (4), pp. lqaf141. Date of Electronic Publication: 2025 Nov 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

MeSH Terms: Alternative Splicing* , Molecular Sequence Annotation*/methods , Metadata*, Humans ; Animals ; Databases, Genetic ; Open Reading Frames ; Genomics/methods ; Transcriptome

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis.

Authors: Zulueta-Coarasa T Jug F Mathur A et al.

Source: Nature methods [Nat Methods] 2025 Nov; Vol. 22 (11), pp. 2245-2252. Date of Electronic Publication: 2025 Sep 15.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

MeSH Terms: Artificial Intelligence* , Metadata*/standards , Image Processing, Computer-Assisted*/methods, Humans ; Information Dissemination ; Guidelines as Topic ; Algorithms

The CLEAR Principle: organizing data and metadata into semantically meaningful types of FAIR Digital Objects to increase their human explorability and cognitive interoperability.

Authors: Vogt L; TIB Leibniz Information Centre for Science and Technology, Welfengarten 1B, 30167, Hanover, Germany. lars.m.vogt@googlemail.com.

Source: Journal of biomedical semantics [J Biomed Semantics] 2025 Oct 28; Vol. 16 (1), pp. 18. Date of Electronic Publication: 2025 Oct 28.

Publication Type: Journal Article

Journal Info: Publisher: Biomed Central Country of Publication: England NLM ID: 101531992 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1480 (Electronic) NLM ISO Abbreviation: J Biomed Semantics Subsets: MEDLINE

MeSH Terms: Semantics* , Metadata* , Cognition*, Humans ; Biological Ontologies

How FAIR is metadata for human pluripotent stem cells?

Authors: Hu M Ankeny RA Santos D et al.

Source: Stem cell reports [Stem Cell Reports] 2025 Oct 14; Vol. 20 (10), pp. 102644. Date of Electronic Publication: 2025 Sep 25.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101611300 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2213-6711 (Electronic) Linking ISSN: 22136711 NLM ISO Abbreviation: Stem Cell Reports Subsets: MEDLINE

MeSH Terms: Pluripotent Stem Cells*/cytology , Metadata*/standards, Humans ; Information Dissemination ; Stem Cell Research

Pre-Meta: priors-augmented retrieval for LLM-based metadata generation.

Authors: Tinn P Sørbø S Jiang S et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Oct 02; Vol. 41 (10).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

MeSH Terms: Metadata* , Software* , Programming Languages* , Genomics*/methods , Information Storage and Retrieval*/methods , Computational Biology*/methods, Databases, Genetic ; High-Throughput Nucleotide Sequencing

Breaking data silos: incorporating the DICOM imaging standard into the OMOP CDM to enable multimodal research.

Authors: Park WY Sippel Schmidt T Salvador G et al.

Corporate Authors: Park WY Sippel Schmidt T Salvador G et al.

Source: Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2025 Oct 01; Vol. 32 (10), pp. 1533-1541.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9430800 Publication Model: Print Cited Medium: Internet ISSN: 1527-974X (Electronic) Linking ISSN: 10675027 NLM ISO Abbreviation: J Am Med Inform Assoc Subsets: MEDLINE

MeSH Terms: Neuroimaging*/standards , Radiology Information Systems*/standards , Metadata* , Multimodal Imaging* , Common Data Elements*, Humans ; Alzheimer Disease/diagnostic imaging ; Magnetic Resonance Imaging/standards ; Vocabulary, Controlled ; Biomedical Research

Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data.

Authors: Vidović D Shamsaei B Schürer SC et al.

Source: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2025 Jul; Vol. 24 (7), pp. 100947. Date of Electronic Publication: 2025 Mar 13.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 101125647 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-9484 (Electronic) Linking ISSN: 15359476 NLM ISO Abbreviation: Mol Cell Proteomics Subsets: MEDLINE

MeSH Terms: Proteomics*/methods , Metadata* , Internet* , Information Dissemination* , Databases, Protein*, Humans ; Multiomics

Let XAI generate reliability metadata, not medical explanations.

Authors: Cabitza F Parimbelli E

Source: Computer methods and programs in biomedicine [Comput Methods Programs Biomed] 2026 Jan; Vol. 273, pp. 109090. Date of Electronic Publication: 2025 Oct 08.

Publication Type: Journal Article; Letter

Journal Info: Publisher: Elsevier Scientific Publishers Country of Publication: Ireland NLM ID: 8506513 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1872-7565 (Electronic) Linking ISSN: 01692607 NLM ISO Abbreviation: Comput Methods Programs Biomed Subsets: MEDLINE

MeSH Terms: Artificial Intelligence* , Metadata* , Clinical Decision-Making*, Humans ; Reproducibility of Results

Conception and Development of a Metadata Search Portal Based on the Data Dictionary Minimal Information Model (DDMIM) Specification.

Authors: Wamba Makem LD Vengadeswaran A Takoulegha DA et al.

Source: Studies in health technology and informatics [Stud Health Technol Inform] 2025 Sep 03; Vol. 331, pp. 228-234.

Publication Type: Journal Article

Journal Info: Publisher: IOS Press Country of Publication: Netherlands NLM ID: 9214582 Publication Model: Print Cited Medium: Internet ISSN: 1879-8365 (Electronic) Linking ISSN: 09269630 NLM ISO Abbreviation: Stud Health Technol Inform Subsets: MEDLINE

MeSH Terms: Metadata*/standards , Information Storage and Retrieval*/methods , Information Storage and Retrieval*/standards , Electronic Health Records*, Humans

Current stewardship practices in invasion biology limit the value and secondary use of genomic data.

Authors: Vaughan AL Parvizi E Matheson P et al.

Source: Molecular ecology resources [Mol Ecol Resour] 2025 Jul; Vol. 25 (5), pp. e13858. Date of Electronic Publication: 2023 Aug 30.

Publication Type: Journal Article

Journal Info: Publisher: Blackwell Country of Publication: England NLM ID: 101465604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1755-0998 (Electronic) Linking ISSN: 1755098X NLM ISO Abbreviation: Mol Ecol Resour Subsets: MEDLINE

MeSH Terms: Introduced Species* , Genomics*/methods , Invertebrates*/genetics , Invertebrates*/classification , Metadata*/standards, Animals

Facilitating analysis and dissemination of proteomics data through metadata integration in MaxQuant.

Authors: Viegener W Urazbakhtin S Ferretti D et al.

Source: Nature communications [Nat Commun] 2025 Sep 25; Vol. 16 (1), pp. 8421. Date of Electronic Publication: 2025 Sep 25.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

MeSH Terms: Proteomics*/methods , Metadata* , Software* , Information Dissemination*/methods, Databases, Protein ; Humans ; Reproducibility of Results

The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.

Authors: Huang YN Jaiswal PV Rajes A et al.

Source: Genome biology [Genome Biol] 2025 Sep 09; Vol. 26 (1), pp. 274. Date of Electronic Publication: 2025 Sep 09.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

MeSH Terms: Metadata*/standards , Databases, Genetic*, Humans ; Animals ; Phenotype ; Genomics

Skull CT metadata for automatic bone age assessment by using three-dimensional deep learning framework.

Authors: Liu M Luo S Lu T et al.

Source: International journal of legal medicine [Int J Legal Med] 2025 Sep; Vol. 139 (5), pp. 2273-2287. Date of Electronic Publication: 2025 Apr 07.

Publication Type: Journal Article

Journal Info: Publisher: Springer International Country of Publication: Germany NLM ID: 9101456 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1437-1596 (Electronic) Linking ISSN: 09379827 NLM ISO Abbreviation: Int J Legal Med Subsets: MEDLINE

MeSH Terms: Deep Learning* , Age Determination by Skeleton*/methods , Skull*/diagnostic imaging , Tomography, X-Ray Computed* , Imaging, Three-Dimensional* , Metadata*, Humans ; Male ; Female ; Adolescent ; Adult ; Middle Aged ; Aged, 80 and over ; Retrospective Studies ; Aged ; Young Adult ; Forensic Anthropology

Five foundational tools for managing metadata from the USDA Long-Term Agroecosystem Research (LTAR) Network.

Authors: Kaplan NE Armendariz G Azad S et al.

Source: Journal of environmental quality [J Environ Qual] 2025 Sep-Oct; Vol. 54 (5), pp. 1230-1244. Date of Electronic Publication: 2025 Apr 25.

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 0330666 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-2537 (Electronic) Linking ISSN: 00472425 NLM ISO Abbreviation: J Environ Qual Subsets: MEDLINE

MeSH Terms: Agriculture* , Metadata* , Ecosystem* , Environmental Monitoring*/methods, United States ; United States Department of Agriculture

Tier-based standards for FAIR sequence data and metadata sharing in microbiome research.

Authors: Kim L Lavrinienko A Sebechlebska Z et al.

Source: Nucleic acids research [Nucleic Acids Res] 2025 Aug 11; Vol. 53 (15).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

MeSH Terms: Metadata*/standards , Information Dissemination*/methods , Microbiota*/genetics , Metagenomics*/standards , Metagenomics*/methods, Humans ; Metagenome/genetics ; Gastrointestinal Microbiome/genetics ; Software