Výsledky vyhledávání - "Metabolic modeling"

Emergence and disruption of cooperativity in a denitrifying microbial community

Autoři: Carr, Alex V Otwell, Anne E Hunt, Kristopher A a další

Zdroj: The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 19(1)

Témata: 3107 Microbiology (for-2020), 31 Biological Sciences (for-2020), Denitrification (mesh), Nitrates (mesh), Comamonadaceae (mesh), Nitrites (mesh), Nitrous Oxide (mesh), Nitric Oxide (mesh), Microbiota (mesh), Comamonadaceae (mesh), Nitrates (mesh), Nitrites (mesh), Nitric Oxide (mesh), Nitrous Oxide (mesh), Denitrification (mesh), Microbiota (mesh), denitrification, kinetic modeling, metabolic modeling, nitrite, nitrous oxide, pathway partitioning, synthetic community, systems biology, Denitrification (mesh), Nitrates (mesh), Comamonadaceae (mesh), Nitrites (mesh), Nitrous Oxide (mesh), Nitric Oxide (mesh), Microbiota (mesh), 05 Environmental Sciences (for), 06 Biological Sciences (for), 10 Technology (for), Microbiology (science-metrix), 31 Biological sciences (for-2020), 41 Environmental sciences (for-2020)

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/8c594549
https://escholarship.org/content/qt8c594549/qt8c594549.pdf

Modeling the emergent metabolic potential of soil microbiomes in Atacama landscapes

Autoři: Constanza M. Andreani-Gerard Natalia E. Jiménez Ricardo Palma a další

Zdroj: Environmental Microbiome, Vol 20, Iss 1, Pp 1-19 (2025)

Témata: Microbial communities, Metagenomics, Metabolic potential, Metabolic network, Metabolic modeling, Community-wide, Environmental sciences, GE1-350, Microbiology, QR1-502

Popis souboru: electronic resource

Relation: https://doaj.org/toc/2524-6372

Přístupová URL adresa: https://doaj.org/article/e9ee47687629427d98a0affd81304064

Sustainable Food Waste Management in Anaerobic Digesters: Prediction of the Organic Load Impact by Metagenome-Scale Metabolic Modeling

Autoři: Orellana E. Zampieri G. De Bernardini N. a další

Zdroj: Environ Sci Technol

Témata: Bioreactors, Sewage, Waste Management, anaerobic codigestion, extracellular enzymes, flux balance analysis, metabolic modeling, metagenomics, microbial metabolic exchanges, Food, Biofuels, Metagenome, Anaerobiosis, Methane

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40126624
https://hdl.handle.net/11577/3551387
https://doi.org/10.1021/acs.est.4c11180

MINN: A METABOLIC-INFORMED NEURAL NETWORK FOR INTEGRATING OMICS DATA INTO GENOME-SCALE METABOLIC MODELING: A metabolic-informed neural network for integrating omics data into genome-scale metabolic modeling

Autoři: Gabriele Tazza Francesco Moro Dario Ruggeri a další

Zdroj: Computational and Structural Biotechnology Journal. 27:3609-3617

Témata: Multi-omics, Flux balance analysis, Machine learning, Neural-networks, 01.02. Számítás- és információtudomány, Genome-scale metabolic modeling, Hybrid model

Popis souboru: text

Přístupová URL adresa: https://research.vu.nl/en/publications/b5927826-3876-4ec0-96b6-77ad731316ff
https://hdl.handle.net/1871.1/b5927826-3876-4ec0-96b6-77ad731316ff
https://doi.org/10.1016/j.csbj.2025.08.004

Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

Autoři: William T. Scott Siemen Rockx Quinten Mariën a další

Přispěvatelé: William T. Scott Siemen Rockx Quinten Mariën a další

Zdroj: Comput Struct Biotechnol J
Minerva. Repositorio Institucional de la Universidad de Santiago de Compostela
Universidad de Santiago de Compostela (USC)
Computational and Structural Biotechnology Journal, Vol 27, Iss, Pp 649-660 (2025)
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL

Témata: Syngas fermentations, Carbon recycling, 3308 Ingeniería y tecnología del medio ambiente, Biology and Life Sciences, LJUNGDAHLII, Thermodynamic flux analysis, Metabolic modeling, Genome-scale modeling, GAS, ETHANOL, GROWTH, Volatile fatty acids, Gas fermentation, Genome-scale modeling Gas fermentation Carbon recycling Volatile fatty acids Thermodynamic flux analysis Metabolic modeling, TP248.13-248.65, Biotechnology, Clostridium luticellarii, Research Article

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40046987
https://hdl.handle.net/10347/39891
https://doaj.org/article/19ff63744c9b47c991f2eb53fa7db9cd
http://doi.org/10.1016/j.csbj.2025.01.013
https://biblio.ugent.be/publication/01JR0CW7ND7E5Z89269APQ6ZVQ
https://biblio.ugent.be/publication/01JR0CW7ND7E5Z89269APQ6ZVQ/file/01JRT1Z9WWGA40Z3TSKS56EJED
http://hdl.handle.net/1854/LU-01JR0CW7ND7E5Z89269APQ6ZVQ

Genome-wide expression analysis in a Fabry disease human podocyte cell line

Autoři: Snanoudj, Sarah Derambure, Céline Zhang, Cheng a další

Zdroj: Heliyon. 10(14)

Témata: Fabry disease, Metabolic modeling, Podocyte, RNAseq, Systems biology, Transcriptomics

Popis souboru: print

Přístupová URL adresa: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-350667
https://doi.org/10.1016/j.heliyon.2024.e34357

Thermodynamic limitations of PHB production from formate and fructose in Cupriavidus necator

Autoři: Janasch, Markus Crang, Nick Asplund-Samuelsson, Johannes a další

Zdroj: Metabolic engineering. 73:256-269

Témata: Cupriavidus necator, Metabolic versatility, Metabolic modeling, Thermodynamics, PHB, Elementary flux modes, Formatotrophy

Popis souboru: print

Přístupová URL adresa: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-320428
https://doi.org/10.1016/j.ymben.2022.08.005

Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups.

Autoři: Neal, Maxwell Brakewood, William Betenbaugh, Michael a další

Témata: Bacillus subtilis, metabolic modeling, metabolism, pan-genome

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/4tn6v6b7
https://escholarship.org/content/qt4tn6v6b7/qt4tn6v6b7.pdf

Modeling the metabolic response of A2780 ovarian cancer cells to gold-based cytotoxic drugs

Autoři: Vieri, Walter Ghini, Veronica Turano, Paola a další

Zdroj: NPJ Syst Biol Appl

Témata: gold-drugs, metabolomics, genome-scale metabolic modeling, Article

Přístupová URL adresa: https://hdl.handle.net/2158/1437865
https://doi.org/10.1038/s41540-025-00535-9

A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes.

Autoři: Hirose, Yujiro Zielinski, Daniel Poudel, Saugat a další

Zdroj: mSystems. 9(9)

Témata: Streptococcus pyogenes, auxotrophy, carbon sources, essential gene, genome-scale model, metabolic modeling, Streptococcus pyogenes, Genome, Bacterial, Humans, Models, Biological, Streptococcal Infections, Serogroup

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/1db7k4pm
https://escholarship.org/content/qt1db7k4pm/qt1db7k4pm.pdf

Metabolic modeling links gut microbiota to metabolic markers of Parkinson’s disease

Autoři: Tim Hensen Ines Thiele

Zdroj: Gut Microbes, Vol 17, Iss 1 (2025)

Témata: Gut microbiome, metabolic modeling, parkinson’s disease, biomarkers, host-microbiome co-metabolism, Diseases of the digestive system. Gastroenterology, RC799-869

Popis souboru: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Přístupová URL adresa: https://doaj.org/article/99db0ccdc12c40e8a2b465b9316f8531

In silico metabolic modelling links microbiome-derived metabolites to risk factors of Alzheimer’s disease

Autoři: Tim Hensen Shahzad Ahmad Gabi Kastenmüller a další

Zdroj: Gut Microbes Reports, Vol 2, Iss 1 (2025)

Témata: Gut microbiome, metabolic modeling, Alzheimer’s disease, APOE, bile acid metabolism, Microbiology, QR1-502

Popis souboru: electronic resource

Relation: https://doaj.org/toc/2993-3935

Přístupová URL adresa: https://doaj.org/article/680256a57d2f4cadac2575dbc7b4dbf4

GEMsembler: consensus model assembly and structural comparison of genome-scale metabolic models across tools improve functional performance

Autoři: Elena K. Matveishina Bartosz J. Bartmanski Sara Benito-Vaquerizo a další

Zdroj: mSystems, Vol 10, Iss 10 (2025)

Témata: metabolic modeling, genetic algorithm, Escherichia coli, Lactobacillus, Microbiology, QR1-502

Popis souboru: electronic resource

Relation: https://doaj.org/toc/2379-5077

Přístupová URL adresa: https://doaj.org/article/95aa93e6fb754470848b51eec5fd1674

Transcriptome enhanced rice grain metabolic model identifies histidine level as a marker for grain chalkiness

Autoři: Niaz Bahar Chowdhury Anil Kumar Nalini Chandran Harkamal Walia a další

Zdroj: Scientific Reports, Vol 15, Iss 1, Pp 1-14 (2025)

Témata: Oryza sativa, Chalkiness, Grain growth phases, Warmer night temperatures, Metabolic modeling., Medicine, Science

Popis souboru: electronic resource

Relation: https://doaj.org/toc/2045-2322

Přístupová URL adresa: https://doaj.org/article/661b0f47476343b9a7d86c3b507abb9d

Pan-cancer analysis of the metabolic reaction network

Autoři: Gatto, Francesco Ferreira, Raphael Nielsen, Jens B

Zdroj: Metabolic Engineering. 57:51-62

Témata: Cancer metabolism, Genome-scale metabolic modeling

Popis souboru: electronic

Přístupová URL adresa: https://research.chalmers.se/publication/513571
https://research.chalmers.se/publication/513571/file/513571_Fulltext.pdf

Ion homeostasis in the regulation of intracellular pH and volume of human erythrocytes

Autoři: О. І. Dotsenko G. V. Taradina

Zdroj: Біофізичний вісник, Iss 51, Pp 7-25 (2024)

Témata: ion transport, na /k -atpase, calmodulin, Medical physics. Medical radiology. Nuclear medicine, osmotic processes, electrochemical membrane potential, band3 protein (ae1), R895-920, са2 -atpase, permeant ions, mathematical metabolic modeling, gardos channels

Přístupová URL adresa: https://doaj.org/article/1b1025d02a194d58994e8653782c2b89

Characterization of oil extracted from wild apricot seeds kernel using submerged alcoholic fermentation and its quality characteristics

Autoři: Nausad, Mohammad Kumar, Harsh Sharma, Gaurav a další

Přispěvatelé: Nausad, Mohammad Kumar, Harsh Sharma, Gaurav a další

Zdroj: Process Biochemistry. 142:175-183

Témata: [SDV.BBM]Life Sciences [q-bio]/Biochemistry, [SDV.IDA]Life Sciences [q-bio]/Food engineering, [SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology, S. cerevisiae, Oil extraction, Sub-merged fermentation, Fatty acids, [SDV.IDA] Life Sciences [q-bio]/Food engineering, Molecular Biology, Apricot kernel, Metabolic modeling

Přístupová URL adresa: https://institut-agro-dijon.hal.science/hal-04628660v1
https://doi.org/10.1016/j.procbio.2024.04.024

Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass

Autoři: Bohyun Choi Albert Tafur Rangel Eduard J. Kerkhoven a další

Zdroj: Choi, B, Tafur Rangel, A, Kerkhoven, E J & Nygård, Y 2024, ' Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass ', Metabolic Engineering, vol. 84, pp. 23-33 . https://doi.org/10.1016/j.ymben.2024.05.003

Témata: 2. Zero hunger, 0301 basic medicine, 0303 health sciences, Xylose, Saccharomyces cerevisiae Proteins, Lactic acid, Saccharomyces cerevisiae, Lignin, Yeast, Metabolic modeling, 03 medical and health sciences, Metabolic Engineering, and Infrastructure, Lactic Acid, Biomass, Robustness, Innovation, Metabolic engineering, SDG 9 - Industry

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38788894
https://orbit.dtu.dk/en/publications/52700d2e-e6df-40b2-99af-c91e5b38ae23

Modeling blood metabolite homeostatic levels reduces sample heterogeneity across cohorts.

Autoři: Liu, Danni Nagana Gowda, G Jiang, Zhongli a další

Zdroj: Proceedings of the National Academy of Sciences. 121(8)

Témata: NMR, homeostasis, metabolic modeling, metabolomics, variance reduction, Adult, Humans, Metabolome, Metabolomics, Magnetic Resonance Spectroscopy, Homeostasis

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/02m7g98z
https://escholarship.org/content/qt02m7g98z/qt02m7g98z.pdf

Genome-scale metabolic model of Staphylococcus epidermidis ATCC 12228 matches in vitro conditions

Autoři: Nantia Leonidou Alina Renz Benjamin Winnerling a další

Zdroj: mSystems
mSystems, Vol 10, Iss 6 (2025)

Témata: genome-scale metabolic modeling, skin mcirobiota, Gram positive, nasal microbiota, systems biology, Microbiology, QR1-502, S. epidermidis, Research Article

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40396730
https://doaj.org/article/c53fd5036f3044e3a54b265cd5c20f2b