Suchergebnisse - "Knowledgebase and Database Resources"

The Unified Phenotype Ontology : a framework for cross-species integrative phenomics

Autoren: Nicolas Matentzoglu Susan M Bello Ray Stefancsik et al.

Weitere Verfasser: Nicolas Matentzoglu Susan M Bello Ray Stefancsik et al.

Quelle: Genetics
Genetics, vol 229, iss 3

Schlagwörter: phenotype, integration, Knowledgebase and Database Resources, Biological Sciences, Phenotype, Biological Ontologies, Biochemistry and cell biology, Genetics, Animals, Humans, Biochemistry and Cell Biology, Generic health relevance, ontology, Phenomics, semantics, Developmental Biology

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/40048704
https://escholarship.org/content/qt88j9p90s/qt88j9p90s.pdf
https://escholarship.org/uc/item/88j9p90s
https://escholarship.org/content/qt8n70v3f6/qt8n70v3f6.pdf
https://escholarship.org/uc/item/8n70v3f6

ZFIN updates to support zebrafish environmental exposure data

Autoren: Yvonne M Bradford Ceri E Van Slyke Jonathan B Muyskens et al.

Quelle: Genetics

Schlagwörter: Phenotype, Databases, Genetic, Animals, Humans, Knowledgebase and Database Resources, Environmental Exposure, Zebrafish

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39903545

Guidelines for gene and genome assembly nomenclature

Autoren: Ethalinda K S Cannon David C Molik Adam J Wright et al.

Quelle: Genetics

Schlagwörter: Genome, Terminology as Topic, Databases, Genetic, Molecular Sequence Annotation, Knowledgebase and Database Resources, Genomics

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39813136

SpudDB: a database for accessing potato genomic data

Autoren: John P Hamilton Julia Brose C Robin Buell

Quelle: Genetics

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Knowledgebase and Database Resources

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39657689

WormBase 2024: status and transitioning to Alliance infrastructure

Autoren: Paul W Sternberg Kimberly Van Auken Qinghua Wang et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, Genome, Helminth, 0303 health sciences, Genome, ICTS (Institute of Clinical and Translational Sciences), Knowledgebase and Database Resources, Genomics, Databases, 03 medical and health sciences, Genetic, Databases, Genetic, Helminth, Medicine and Health Sciences, Animals, Caenorhabditis elegans

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38573366

Updates to the Alliance of Genome Resources central infrastructure

Autoren: Aleksander, Suzanne A. Anagnostopoulos, Anna V. Antonazzo, Giulia et al.

Weitere Verfasser: Aleksander, Suzanne A. Anagnostopoulos, Anna V. Antonazzo, Giulia et al.

Quelle: Genetics
Genetics, vol 227, iss 1

Schlagwörter: 0301 basic medicine, Bioinformatics and Computational Biology, text mining, yeast, Databases, Mice, 03 medical and health sciences, Genetic, Databases, Genetic, Genetics, Machine Learning and Artificial Intelligence, Animals, Caenorhabditis elegans, data integration, database, mouse, JMG, 0303 health sciences, Genome, software, Human Genome, Knowledgebase and Database Resources, Genomics, Biological Sciences, zebrafish, knowledgebase, Alliance of Genome Resources Consortium, Networking and Information Technology R&D (NITRD), Biochemistry and cell biology, Drosophila, Software, Biotechnology, Developmental Biology

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38552170
https://escholarship.org/uc/item/1548r7x2
https://escholarship.org/content/qt1548r7x2/qt1548r7x2.pdf

Mouse Genome Informatics: an integrated knowledgebase system for the laboratory mouse

Autoren: Richard M Baldarelli Cynthia L Smith Martin Ringwald et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, Mice, 0303 health sciences, 03 medical and health sciences, Genome, Knowledge Bases, Databases, Genetic, Animals, Computational Biology, Humans, Knowledgebase and Database Resources, Genomics

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38531069

What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species

Autoren: Evelina Y Basenko Achchuthan Shanmugasundram Ulrike Böhme et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, Internet, 0303 health sciences, 03 medical and health sciences, Oomycetes, Databases, Genetic, Fungi, Computational Biology, Knowledgebase and Database Resources, Genomics, Genome, Fungal, Software

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38529759

Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects

Autoren: Myra Paz David Masinas Athanasios Litsios Anastasia Razdaibiedina et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Saccharomyces cerevisiae Proteins, Cell Cycle, Data Mining, Knowledgebase and Database Resources, Saccharomyces cerevisiae

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38518223

PomBase: a Global Core Biodata Resource—growth, collaboration, and sustainability

Autoren: Rutherford, Kim M Lera-Ramírez, Manuel Wood, Valerie et al.

Weitere Verfasser: Rutherford, Kim M Lera-Ramírez, Manuel Wood, Valerie et al.

Quelle: Genetics

Schlagwörter: standardization, biocuration, Knowledgebase and Database Resources, model organism database, fission yeast, knowledgebase, 12. Responsible consumption, Global BioData Coalition, Schizosaccharomyces pombe, Schizosaccharomyces, Databases, Genetic, 11. Sustainability, Genome, Fungal, MOD, model organism, Global Core Biodata Resource, database, FAIR

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38376816
https://discovery-pp.ucl.ac.uk/id/eprint/10188029/

FlyBase: updates to the Drosophila genes and genomes database

Autoren: Arzu Öztürk-Çolak Steven J Marygold Giulia Antonazzo et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Drosophila melanogaster, Databases, Genetic, Genome, Insect, Animals, Genes, Insect, Knowledgebase and Database Resources, Genomics

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38301657

Echinobase: a resource to support the echinoderm research community

Autoren: Cheryl A Telmer Kamran Karimi Macie M Chess et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Genome, Sea Urchins, Knowledge Bases, Databases, Genetic, Animals, Knowledgebase and Database Resources, Genomics, Echinodermata

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38262680

The Arabidopsis Information Resource in 2024

Autoren: Leonore Reiser Erica Bakker Sabarinath Subramaniam et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Gene Ontology, Arabidopsis Proteins, Databases, Genetic, Arabidopsis, Molecular Sequence Annotation, Knowledgebase and Database Resources, 15. Life on land, Genome, Plant

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38457127

Revised fission yeast gene and allele nomenclature guidelines for machine readability

Autoren: Lera-Ramírez, Manuel Bähler, Jürg Mata, Juan et al.

Weitere Verfasser: Lera-Ramírez, Manuel Bähler, Jürg Mata, Juan et al.

Quelle: Genetics
Lera-ramírez, M, Bähler, J, Mata, J, Rutherford, K, Hoffman, C S, Lambert, S, Oliferenko, S, Martin, S G, Gould, K L, Du, L, Sabatinos, S A, Forsburg, S L, Nielsen, O, Nurse, P & Wood, V 2023, ' Revised fission yeast gene and allele nomenclature guidelines for machine readability ', Genetics, vol. 225, no. 3, iyad143 . https://doi.org/10.1093/genetics/iyad143

Schlagwörter: Model organisms, Gene variant, Genotype, genotype, Biochemistry & Proteomics, Database, Knowledge base, Ecology,Evolution & Ethology, gene variant, Schizosaccharomyces, Databases, Genetic, Humans, model organism, database, Alleles, FAIR, Computational & Systems Biology, standardization, Allele, Chemical Biology & High Throughput, Model organism, Nomenclature, allele, Knowledgebase and Database Resources, Cell Biology, Fission yeast, fission yeast, Standardization, [SDV] Life Sciences [q-bio], Phenotype, Cell Cycle & Chromosomes, nomenclature, knowledge base, Synthetic Biology, Comprehension, Genetics & Genomics

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/37758508
https://hal.science/hal-04278271v1
https://doi.org/10.1093/genetics/iyad143
https://hal.science/hal-04278271v1/document
https://curis.ku.dk/ws/files/372189730/iyad143.pdf
https://discovery-pp.ucl.ac.uk/id/eprint/10178098/

From multiallele fish to nonstandard environments, how ZFIN assigns phenotypes, human disease models, and gene expression annotations to genes

Autoren: Bradford, Yvonne M Van Slyke, Ceri E Howe, Douglas G et al.

Quelle: Genetics

Schlagwörter: Genome, Phenotype, Humans, Animals, Gene Expression, 14. Life underwater, Knowledgebase and Database Resources, Genomics, Zebrafish, 3. Good health

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/36864549

Xenbase: key features and resources of the Xenopus model organism knowledgebase

Autoren: Malcolm Fisher Christina James-Zorn Virgilio Ponferrada et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, Xenopus laevis, 0303 health sciences, 03 medical and health sciences, Xenopus, Databases, Genetic, Animals, Humans, Computational Biology, Knowledgebase and Database Resources, Genomics

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/36755307

FlyBase: a guided tour of highlighted features

Autoren: L Sian Gramates Julie Agapite Helen Attrill et al.

Weitere Verfasser: L Sian Gramates Julie Agapite Helen Attrill et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, FlyBase, 0303 health sciences, 03 medical and health sciences, Drosophila melanogaster, Genome, Databases, Genetic, Animals, Drosophila, Knowledgebase and Database Resources, Genomics, model organism database

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/35266522

Harmonizing model organism data in the Alliance of Genome Resources

Autoren: Agapite, Julie Albou, Laurent-Philippe Aleksander, Suzanne A. et al.

Weitere Verfasser: Agapite, Julie Albou, Laurent-Philippe Aleksander, Suzanne A. et al.

Quelle: Genetics
Genetics, vol 220, iss 4

Schlagwörter: Internet (mesh), 0301 basic medicine, 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Mice, 0604 Genetics (for), Databases, Genetic, Medicine and Health Sciences, Animals (mesh), 3101 Biochemistry and cell biology (for-2020), Zebrafish, Developmental Biology (science-metrix), Humans (mesh), variants, Drosophila (mesh), biocuration, Generic health relevance (hrcs-hc), Caenorhabditis elegans (mesh), Life Sciences, Mice (mesh), Biological Sciences, 1.5 Resources and infrastructure (underpinning), 1.5 Resources and infrastructure (underpinning) (hrcs-rac), 3. Good health, Rats (mesh), Alliance of Genome Resources Consortium, Alleles (mesh), Drosophila, Biotechnology, phenotype, 1.1 Normal biological development and functioning, Bioinformatics and Computational Biology, Biotechnology (rcdc), Databases, 03 medical and health sciences, Genetic, Molecular Sequence Annotation (mesh), Genetics, Animals, Humans, Caenorhabditis elegans, genome, Alleles, JMG, 1.1 Normal biological development and functioning (hrcs-rac), Internet, 31 Biological Sciences (for-2020), Genetics (rcdc), 9. Industry and infrastructure, gene interaction, Human Genome, Saccharomycetales (mesh), Molecular Sequence Annotation, Knowledgebase and Database Resources, data mining, Human Genome (rcdc), knowledgebase, Rats, Zebrafish (mesh), Gene Ontology (mesh), gene function, Gene Ontology, Biochemistry and cell biology, Saccharomycetales, gene expression, Genetic (mesh), Generic health relevance, Developmental Biology

Dateibeschreibung: application/pdf

Zugangs-URL: https://academic.oup.com/genetics/advance-article-pdf/doi/10.1093/genetics/iyac022/42616157/iyac022.pdf
https://pubmed.ncbi.nlm.nih.gov/35380658
https://escholarship.org/uc/item/8xx9b11g
https://escholarship.org/content/qt8xx9b11g/qt8xx9b11g.pdf

WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans

Autoren: Paul Davis Magdalena Zarowiecki Valerio Arnaboldi et al.

Weitere Verfasser: Paul Davis Magdalena Zarowiecki Valerio Arnaboldi et al.

Quelle: Genetics
Genetics, vol 220, iss 4

Schlagwörter: 0301 basic medicine, Nematoda, nematode, mining, resource, caenorhabditis, Databases, 03 medical and health sciences, platform, Genetic, Databases, Genetic, Genetics, Animals, Humans, human, gene, Caenorhabditis elegans, database, 0303 health sciences, model, research, Genome, software, Human Genome, literature, health, curation, Knowledgebase and Database Resources, Genomics, Biological Sciences, 1.5 Resources and infrastructure (underpinning), 3. Good health, annotation, data, Biochemistry and cell biology, tools, Caenorhabditis, community, Generic health relevance, Developmental Biology

Dateibeschreibung: application/pdf

Zugangs-URL: https://academic.oup.com/genetics/advance-article-pdf/doi/10.1093/genetics/iyac003/42380929/iyac003.pdf
https://pubmed.ncbi.nlm.nih.gov/35134929
https://escholarship.org/uc/item/2ch788zm
https://escholarship.org/content/qt2ch788zm/qt2ch788zm.pdf

MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses

Autoren: Mahima Vedi Harika S Nalabolu Chien-Wei Lin et al.

Quelle: Genetics

Schlagwörter: 0301 basic medicine, Internet, Mice, 0303 health sciences, 03 medical and health sciences, Gene Ontology, Genome, Databases, Genetic, Animals, Knowledgebase and Database Resources, Software, Rats

Zugangs-URL: https://academic.oup.com/genetics/advance-article-pdf/doi/10.1093/genetics/iyac005/42321546/iyac005.pdf
https://pubmed.ncbi.nlm.nih.gov/35380657