Search Results - "Histone Code (mesh)"

The nuclear periphery confers repression on H3K9me2-marked genes and transposons to shape cell fate

Authors: Marin, Harold C Allen, Charlie Simental, Eric et al.

Source: Nature Cell Biology. 27(8)

Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 31 Biological Sciences (for-2020), Stem Cell Research - Embryonic - Non-Human (rcdc), Genetics (rcdc), Regenerative Medicine (rcdc), Stem Cell Research (rcdc), Human Genome (rcdc), 1.1 Normal biological development and functioning (hrcs-rac), Generic health relevance (hrcs-hc), Cell Nucleus (mesh), Cell Shape (mesh), Histones (mesh), Histone Code (mesh), Animals (mesh), Mice (mesh), Mouse Embryonic Stem Cells (mesh), Heterochromatin (mesh), Lamins (mesh), DNA Transposable Elements (mesh), Gene Knockout Techniques (mesh), Genome (mesh), Lamin B Receptor (mesh), Gene Expression Regulation, Developmental (mesh), Germ Layers (mesh), Pluripotent Stem Cells (mesh), DNA-Binding Proteins (mesh), Membrane Proteins (mesh), Cell Nucleus (mesh), Heterochromatin (mesh), Pluripotent Stem Cells (mesh), Germ Layers (mesh), Animals (mesh), Mice (mesh), DNA-Binding Proteins (mesh), Membrane Proteins (mesh), Histones (mesh), Lamins (mesh), DNA Transposable Elements (mesh), Cell Shape (mesh), Gene Expression Regulation, Developmental (mesh), Histone Code (mesh), Genome (mesh), Gene Knockout Techniques (mesh), Mouse Embryonic Stem Cells (mesh), Lamin B Receptor (mesh), Cell Nucleus (mesh), Cell Shape (mesh), Histones (mesh), Histone Code (mesh), Animals (mesh), Mice (mesh), Mouse Embryonic Stem Cells (mesh), Heterochromatin (mesh), Lamins (mesh), DNA Transposable Elements (mesh), Gene Knockout Techniques (mesh), Genome (mesh), Lamin B Receptor (mesh), Gene Expression Regulation, Developmental (mesh), Germ Layers (mesh), Pluripotent Stem Cells (mesh), DNA-Binding Proteins (mesh), Membrane Proteins (mesh), 06 Biological Sciences (for), 11 Medical and Health Sciences (for), Developmental Biology (science-metrix), 3101 Biochemistry and cell biology (for-2020)

Access URL: https://escholarship.org/uc/item/3w23v326

BAHCC1 binds H3K27me3 via a conserved BAH module to mediate gene silencing and oncogenesis

Authors: Fan, Huitao Lu, Jiuwei Guo, Yiran et al.

Source: Nature Genetics. 52(12)

Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 3105 Genetics (for-2020), 31 Biological Sciences (for-2020), Pediatric (rcdc), Pediatric Cancer (rcdc), Rare Diseases (rcdc), Hematology (rcdc), Human Genome (rcdc), Genetics (rcdc), Cancer (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), Generic health relevance (hrcs-hc), Animals (mesh), Carcinogenesis (mesh), Cell Differentiation (mesh), Cell Line, Tumor (mesh), Chromatin Immunoprecipitation (mesh), Gene Expression Regulation (mesh), Gene Silencing (mesh), HEK293 Cells (mesh), HeLa Cells (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Jurkat Cells (mesh), Leukemia (mesh), Methylation (mesh), Mice (mesh), Mice, Transgenic (mesh), Neoplasm Transplantation (mesh), Protein Processing, Post-Translational (mesh), Proteins (mesh), Transplantation, Heterologous (mesh), Cell Line, Tumor (mesh), Hela Cells (mesh), Jurkat Cells (mesh), Animals (mesh), Mice, Transgenic (mesh), Humans (mesh), Mice (mesh), Leukemia (mesh), Proteins (mesh), Histones (mesh), Transplantation, Heterologous (mesh), Chromatin Immunoprecipitation (mesh), Neoplasm Transplantation (mesh), Cell Differentiation (mesh), Gene Expression Regulation (mesh), Gene Silencing (mesh), Protein Processing, Post-Translational (mesh), Histone Code (mesh), Methylation (mesh), HEK293 Cells (mesh), Carcinogenesis (mesh), Animals (mesh), Carcinogenesis (mesh), Cell Differentiation (mesh), Cell Line, Tumor (mesh), Chromatin Immunoprecipitation (mesh), Gene Expression Regulation (mesh), Gene Silencing (mesh), HEK293 Cells (mesh), HeLa Cells (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Jurkat Cells (mesh), Leukemia (mesh), Methylation (mesh), Mice (mesh), Mice, Transgenic (mesh), Neoplasm Transplantation (mesh), Protein Processing, Post-Translational (mesh), Proteins (mesh), Transplantation, Heterologous (mesh), 06 Biological Sciences (for), 11 Medical and Health Sciences (for), Developmental Biology (science-metrix), 3001 Agricultural biotechnology (for-2020), 3102 Bioinformatics and computational biology (for-2020), 3105 Genetics (for-2020)

Access URL: https://escholarship.org/uc/item/5p43k8zp

An integrative approach for fine-mapping chromatin interactions

Authors: Jaroszewicz, Artur Ernst, Jason

Source: Bioinformatics. 36(6)

Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Bioengineering (rcdc), Genetics (rcdc), Biotechnology (rcdc), Networking and Information Technology R&D (NITRD) (rcdc), Human Genome (rcdc), Generic health relevance (hrcs-hc), Chromatin (mesh), Genome (mesh), Histone Code (mesh), Neural Networks, Computer (mesh), Software (mesh), Chromatin (mesh), Histone Code (mesh), Genome (mesh), Software (mesh), Neural Networks, Computer (mesh), Chromatin (mesh), Genome (mesh), Histone Code (mesh), Neural Networks, Computer (mesh), Software (mesh), 01 Mathematical Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 46 Information and computing sciences (for-2020), 49 Mathematical sciences (for-2020)

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Access URL: https://escholarship.org/uc/item/2gm0k5fb
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Epigenetics of inflammatory arthritis

Authors: Hammaker, Deepa Firestein, Gary S

Source: Current Opinion in Rheumatology. 30(2)

Subject Terms: 32 Biomedical and Clinical Sciences (for-2020), 3204 Immunology (for-2020), Clinical Research (rcdc), Lupus (rcdc), Arthritis (rcdc), Genetics (rcdc), Rheumatoid Arthritis (rcdc), Autoimmune Disease (rcdc), Osteoarthritis (rcdc), Women's Health (rcdc), Human Genome (rcdc), Aging (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), Inflammatory and immune system (hrcs-hc), Arthritis (mesh), Arthritis, Rheumatoid (mesh), DNA Methylation (mesh), Epigenesis, Genetic (mesh), Fibroblasts (mesh), Histone Code (mesh), Humans (mesh), Lupus Erythematosus, Systemic (mesh), MicroRNAs (mesh), Osteoarthritis (mesh), RNA, Untranslated (mesh), Rheumatic Diseases (mesh), Spondylitis, Ankylosing (mesh), ankylosing spondylitis, epigenetics, histone, inflammatory arthritis, methylation, microRNA, osteoarthritis, rheumatoid arthritis, systemic lupus erythematosus, Fibroblasts (mesh), Humans (mesh), Spondylitis, Ankylosing (mesh), Arthritis (mesh), Arthritis, Rheumatoid (mesh), Osteoarthritis (mesh), Rheumatic Diseases (mesh), Lupus Erythematosus, Systemic (mesh), MicroRNAs (mesh), RNA, Untranslated (mesh), DNA Methylation (mesh), Epigenesis, Genetic (mesh), Histone Code (mesh), Arthritis (mesh), Arthritis, Rheumatoid (mesh), DNA Methylation (mesh), Epigenesis, Genetic (mesh), Fibroblasts (mesh), Histone Code (mesh), Humans (mesh), Lupus Erythematosus, Systemic (mesh), MicroRNAs (mesh), Osteoarthritis (mesh), RNA, Untranslated (mesh), Rheumatic Diseases (mesh), Spondylitis, Ankylosing (mesh), 1103 Clinical Sciences (for), Arthritis & Rheumatology (science-metrix), 3202 Clinical sciences (for-2020)

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https://escholarship.org/content/qt39j8p469/qt39j8p469.pdf

Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes

Authors: Ai, Rizi Laragione, Teresina Hammaker, Deepa et al.

Source: Nature Communications. 9(1)

Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Rheumatoid Arthritis (rcdc), Autoimmune Disease (rcdc), Arthritis (rcdc), Clinical Research (rcdc), Women's Health (rcdc), Genetics (rcdc), Human Genome (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), Inflammatory and immune system (hrcs-hc), Adult (mesh), Aged (mesh), Arthritis, Rheumatoid (mesh), Chromatin (mesh), DNA Methylation (mesh), Epigenesis, Genetic (mesh), Female (mesh), Fibroblasts (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Male (mesh), Methylation (mesh), Middle Aged (mesh), Promoter Regions, Genetic (mesh), Synoviocytes (mesh), Chromatin (mesh), Fibroblasts (mesh), Humans (mesh), Arthritis, Rheumatoid (mesh), Histones (mesh), DNA Methylation (mesh), Epigenesis, Genetic (mesh), Histone Code (mesh), Methylation (mesh), Adult (mesh), Aged (mesh), Middle Aged (mesh), Female (mesh), Male (mesh), Promoter Regions, Genetic (mesh), Synoviocytes (mesh), Adult (mesh), Aged (mesh), Arthritis, Rheumatoid (mesh), Chromatin (mesh), DNA Methylation (mesh), Epigenesis, Genetic (mesh), Female (mesh), Fibroblasts (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Male (mesh), Methylation (mesh), Middle Aged (mesh), Promoter Regions, Genetic (mesh), Synoviocytes (mesh)

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Identification of H3K4me1-associated proteins at mammalian enhancers

Authors: Local, Andrea Huang, Hui Albuquerque, Claudio P et al.

Source: Nature Genetics. 50(1)

Subject Terms: 3101 Biochemistry and Cell Biology (for-2020), 31 Biological Sciences (for-2020), Human Genome (rcdc), Genetics (rcdc), 1.1 Normal biological development and functioning (hrcs-rac), Generic health relevance (hrcs-hc), Animals (mesh), Cell Line (mesh), Chromatin (mesh), Chromatin Assembly and Disassembly (mesh), Enhancer Elements, Genetic (mesh), HeLa Cells (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Lysine (mesh), Mice (mesh), Nuclear Proteins (mesh), Nucleosomes (mesh), Protein Binding (mesh), Cell Line (mesh), Hela Cells (mesh), Chromatin (mesh), Nucleosomes (mesh), Animals (mesh), Humans (mesh), Mice (mesh), Lysine (mesh), Nuclear Proteins (mesh), Histones (mesh), Chromatin Assembly and Disassembly (mesh), Histone Code (mesh), Protein Binding (mesh), Enhancer Elements, Genetic (mesh), Animals (mesh), Cell Line (mesh), Chromatin (mesh), Chromatin Assembly and Disassembly (mesh), Enhancer Elements, Genetic (mesh), HeLa Cells (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Lysine (mesh), Mice (mesh), Nuclear Proteins (mesh), Nucleosomes (mesh), Protein Binding (mesh), 06 Biological Sciences (for), 11 Medical and Health Sciences (for), Developmental Biology (science-metrix), 3001 Agricultural biotechnology (for-2020), 3102 Bioinformatics and computational biology (for-2020), 3105 Genetics (for-2020)

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Access URL: https://escholarship.org/uc/item/9s9286nj
https://escholarship.org/content/qt9s9286nj/qt9s9286nj.pdf

Fifteen new risk loci for coronary artery disease highlight arterial-wall-specific mechanisms

Authors: Howson, Joanna MM Zhao, Wei Barnes, Daniel R et al.

Source: Nature Genetics. 49(7)

Subject Terms: 31 Biological Sciences (for-2020), 3105 Genetics (for-2020), Cardiovascular (rcdc), Aging (rcdc), Atherosclerosis (rcdc), Heart Disease - Coronary Heart Disease (rcdc), Human Genome (rcdc), Clinical Research (rcdc), Genetics (rcdc), Heart Disease (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), Cardiovascular (hrcs-hc), Arteries (mesh), Atherosclerosis (mesh), Cell Adhesion (mesh), Chemotaxis, Leukocyte (mesh), Coronary Artery Disease (mesh), Energy Metabolism (mesh), Female (mesh), Genetic Predisposition to Disease (mesh), Genome-Wide Association Study (mesh), Genotype (mesh), Histone Code (mesh), Humans (mesh), Male (mesh), Muscle, Smooth, Vascular (mesh), Polymorphism, Single Nucleotide (mesh), Quantitative Trait Loci (mesh), Risk Factors (mesh), CARDIoGRAMplusC4D, EPIC-CVD, Muscle, Smooth, Vascular (mesh), Arteries (mesh), Humans (mesh), Genetic Predisposition to Disease (mesh), Risk Factors (mesh), Cell Adhesion (mesh), Chemotaxis, Leukocyte (mesh), Histone Code (mesh), Energy Metabolism (mesh), Genotype (mesh), Polymorphism, Single Nucleotide (mesh), Quantitative Trait Loci (mesh), Female (mesh), Male (mesh), Atherosclerosis (mesh), Coronary Artery Disease (mesh), Genome-Wide Association Study (mesh), Arteries (mesh), Atherosclerosis (mesh), Cell Adhesion (mesh), Chemotaxis, Leukocyte (mesh), Coronary Artery Disease (mesh), Energy Metabolism (mesh), Female (mesh), Genetic Predisposition to Disease (mesh), Genome-Wide Association Study (mesh), Genotype (mesh), Histone Code (mesh), Humans (mesh), Male (mesh), Muscle, Smooth, Vascular (mesh), Polymorphism, Single Nucleotide (mesh), Quantitative Trait Loci (mesh), Risk Factors (mesh), 06 Biological Sciences (for), 11 Medical and Health Sciences (for), Developmental Biology (science-metrix), 3001 Agricultural biotechnology (for-2020), 3102 Bioinformatics and computational biology (for-2020), 3105 Genetics (for-2020)

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https://escholarship.org/content/qt26s3k8qt/qt26s3k8qt.pdf

Improved regulatory element prediction based on tissue-specific local epigenomic signatures

Authors: He, Yupeng Gorkin, David U Dickel, Diane E et al.

Source: Proceedings of the National Academy of Sciences of the United States of America. 114(9)

Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Bioengineering (rcdc), Human Genome (rcdc), Genetics (rcdc), 1.1 Normal biological development and functioning (hrcs-rac), 2.1 Biological and endogenous factors (hrcs-rac), Generic health relevance (hrcs-hc), Algorithms (mesh), Computational Biology (mesh), DNA Methylation (mesh), Enhancer Elements, Genetic (mesh), Epigenesis, Genetic (mesh), Epigenomics (mesh), Gene Expression Regulation (mesh), Genomics (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Transcription, Genetic (mesh), enhancer prediction, DNA methylation, bioinformatics, gene regulation, epigenetics, Humans (mesh), Histones (mesh), Computational Biology (mesh), Genomics (mesh), DNA Methylation (mesh), Transcription, Genetic (mesh), Gene Expression Regulation (mesh), Epigenesis, Genetic (mesh), Histone Code (mesh), Algorithms (mesh), Enhancer Elements, Genetic (mesh), Epigenomics (mesh), DNA methylation, bioinformatics, enhancer prediction, epigenetics, gene regulation, Algorithms (mesh), Computational Biology (mesh), DNA Methylation (mesh), Enhancer Elements, Genetic (mesh), Epigenesis, Genetic (mesh), Epigenomics (mesh), Gene Expression Regulation (mesh), Genomics (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Transcription, Genetic (mesh)

Access URL: https://escholarship.org/uc/item/6km7p934

Evidence for sequence biases associated with patterns of histone methylation

Authors: Wang, Zhong Willard, Huntington F

Source: BMC Genomics. 13(1)

Subject Terms: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), 3105 Genetics (for-2020), Biotechnology (rcdc), Genetics (rcdc), Human Genome (rcdc), 1.1 Normal biological development and functioning (hrcs-rac), Generic health relevance (hrcs-hc), Base Sequence (mesh), Cell Line (mesh), Chromatin (mesh), Epigenesis, Genetic (mesh), Genome, Human (mesh), Genome-Wide Association Study (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Methylation (mesh), Molecular Sequence Data (mesh), Primary Cell Culture (mesh), Protein Processing, Post-Translational (mesh), T-Lymphocytes (mesh), T-Lymphocytes (mesh), Cell Line (mesh), Chromatin (mesh), Humans (mesh), Histones (mesh), Epigenesis, Genetic (mesh), Protein Processing, Post-Translational (mesh), Histone Code (mesh), Base Sequence (mesh), Methylation (mesh), Genome, Human (mesh), Molecular Sequence Data (mesh), Genome-Wide Association Study (mesh), Primary Cell Culture (mesh), Base Sequence (mesh), Cell Line (mesh), Chromatin (mesh), Epigenesis, Genetic (mesh), Genome, Human (mesh), Genome-Wide Association Study (mesh), Histone Code (mesh), Histones (mesh), Humans (mesh), Methylation (mesh), Molecular Sequence Data (mesh), Primary Cell Culture (mesh), Protein Processing, Post-Translational (mesh), T-Lymphocytes (mesh), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), 11 Medical and Health Sciences (for), Bioinformatics (science-metrix), 31 Biological sciences (for-2020), 32 Biomedical and clinical sciences (for-2020)

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