Search Results - "Graph"

Morphometric similarity network-based graph convolutional networks for schizophrenia classification.

Authors: Park HW Lee WH

Source: Scientific reports [Sci Rep] 2025 Oct 16; Vol. 15 (1), pp. 36191. Date of Electronic Publication: 2025 Oct 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH Terms: Schizophrenia*/diagnosis , Schizophrenia*/diagnostic imaging , Schizophrenia*/pathology , Graph Neural Networks* , Convolutional Neural Networks*, Humans ; Magnetic Resonance Imaging ; Datasets as Topic ; Brain/diagnostic imaging ; Male ; Female ; Adolescent ; Adult ; Middle Aged ; Aged

Enhancing explainable AI with graph signal processing: Applications in water distribution systems.

Authors: Brentan BM Menapace A Oberascher M et al.

Source: Water research [Water Res] 2025 Oct 01; Vol. 285, pp. 124022. Date of Electronic Publication: 2025 Jul 05.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: England NLM ID: 0105072 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2448 (Electronic) Linking ISSN: 00431354 NLM ISO Abbreviation: Water Res Subsets: MEDLINE

MeSH Terms: Artificial Intelligence* , Water Supply* , Graph Neural Networks*

Enzyme specificity prediction using cross-attention graph neural networks.

Authors: Cui H Su Y Dean TJ et al.

Source: Nature [Nature] 2025 Nov; Vol. 647 (8090), pp. 639-647. Date of Electronic Publication: 2025 Oct 08.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

MeSH Terms: Enzymes*/metabolism , Enzymes*/chemistry , Graph Neural Networks*, Biocatalysis ; Catalytic Domain ; Databases, Protein ; Machine Learning ; Models, Molecular ; Reproducibility of Results ; Substrate Specificity

Glycolysis-compatible urethanases for polyurethane recycling.

Authors: Chen Y Sun J Shi K et al.

Source: Science (New York, N.Y.) [Science] 2025 Oct 30; Vol. 390 (6772), pp. 503-509. Date of Electronic Publication: 2025 Oct 30.

Publication Type: Journal Article

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

MeSH Terms: Glycolysis* , Polyurethanes*/chemistry , Polyurethanes*/metabolism , Recycling* , Amidohydrolases*/chemistry , Graph Neural Networks* , Deep Learning*, Biocatalysis ; Enzyme Stability ; Hydrophobic and Hydrophilic Interactions

SecProGNN: Predicting Bronchoalveolar Lavage Fluid Secreted Protein Using Graph Neural Network.

Authors: Shao D Zhang G Lin L et al.

Source: IEEE journal of biomedical and health informatics [IEEE J Biomed Health Inform] 2025 Aug; Vol. 29 (8), pp. 6114-6123.

Publication Type: Comparative Study; Journal Article

Journal Info: Publisher: Institute of Electrical and Electronics Engineers Country of Publication: United States NLM ID: 101604520 Publication Model: Print Cited Medium: Internet ISSN: 2168-2208 (Electronic) Linking ISSN: 21682194 NLM ISO Abbreviation: IEEE J Biomed Health Inform Subsets: MEDLINE

MeSH Terms: Bronchoalveolar Lavage Fluid*/chemistry , Graph Neural Networks* , Multilayer Perceptrons* , Deep Learning* , Proteomics*/methods, Humans ; Biomarkers, Tumor/analysis ; Adenocarcinoma of Lung/diagnosis ; Lung Neoplasms/diagnosis

Generative and contrastive graph representation learning with message passing.

Authors: Tang Y Yang Y Sun G

Source: Neural networks : the official journal of the International Neural Network Society [Neural Netw] 2025 May; Vol. 185, pp. 107224. Date of Electronic Publication: 2025 Feb 06.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: United States NLM ID: 8805018 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2782 (Electronic) Linking ISSN: 08936080 NLM ISO Abbreviation: Neural Netw Subsets: MEDLINE

MeSH Terms: Graph Neural Networks* , Supervised Machine Learning*, Datasets as Topic ; Autoencoder ; Generative Artificial Intelligence

Negative-Weight Single-Source Shortest Paths in Near-linear Time.

Authors: Bernstein, Aaron Nanongkai, Danupon Wulff-Nilsen, Christian

Source: Journal of the ACM. Aug2025, Vol. 72 Issue 4, p1-34. 34p.

Subject Terms: *ALGORITHMS, GRAPH algorithms, GRAPH theory, COMPUTATIONAL complexity

Graph neural networks for single-cell omics data: a review of approaches and applications.

Authors: Li S Hua H Chen S

Source: Briefings in bioinformatics [Brief Bioinform] 2025 Mar 04; Vol. 26 (2).

Publication Type: Journal Article; Systematic Review

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH Terms: Computational Biology*/methods , Genomics*/methods , Graph Neural Networks* , Single-Cell Analysis*/methods, Humans ; Deep Learning ; Epigenomics ; Neural Networks, Computer ; Proteomics/methods

Schizophrenia recognition based on three-dimensional adaptive graph convolutional neural network.

Authors: Yin G Yuan J Chen Y et al.

Source: Scientific reports [Sci Rep] 2025 Feb 03; Vol. 15 (1), pp. 4067. Date of Electronic Publication: 2025 Feb 03.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH Terms: Schizophrenia*/diagnosis , Schizophrenia*/diagnostic imaging , Schizophrenia*/physiopathology , Graph Neural Networks* , Convolutional Neural Networks*, Humans ; Male ; Female ; Adult ; Algorithms ; Nerve Net/physiopathology ; Models, Neurological ; Electroencephalography

Deterministic Minimum Cut in Poly-logarithmic Maximum Flows.

Authors: Li, Jason Panigrahi, Debmalya

Source: Journal of the ACM. Aug2025, Vol. 72 Issue 4, p1-18. 18p.

Subject Terms: UNDIRECTED graphs, GRAPH theory, DETERMINISTIC algorithms

Vertex Connectivity in Poly-logarithmic Max-Flows.

Authors: Li, Jason Nanongkai, Danupon Panigrahi, Debmalya et al.

Source: Journal of the ACM. Aug2025, Vol. 72 Issue 4, p1-34. 34p.

Subject Terms: *ALGORITHMS, GRAPH connectivity, COMPUTATIONAL complexity, DIRECTED graphs, UNDIRECTED graphs

Nonsuicidal self-injury prediction with pain-processing neural circuits using interpretable graph neural network.

Authors: Wu S Xue Y Hang Y et al.

Source: Annals of medicine [Ann Med] 2025 Dec; Vol. 57 (1), pp. 2520394. Date of Electronic Publication: 2025 Jun 17.

Publication Type: Journal Article

Journal Info: Publisher: Informa Healthcare Country of Publication: England NLM ID: 8906388 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-2060 (Electronic) Linking ISSN: 07853890 NLM ISO Abbreviation: Ann Med Subsets: MEDLINE

MeSH Terms: Self-Injurious Behavior*/physiopathology , Self-Injurious Behavior*/psychology , Self-Injurious Behavior*/diagnostic imaging , Nerve Net*/physiopathology , Nerve Net*/diagnostic imaging , Pain*/physiopathology , Brain*/physiopathology , Brain*/diagnostic imaging , Pain Perception*/physiology, Humans ; Male ; Female ; Adult ; Magnetic Resonance Imaging/methods ; Diffusion Tensor Imaging ; Young Adult ; Neural Networks, Computer ; Middle Aged ; Case-Control Studies ; Graph Neural Networks

Path-aware multi-scale learning for heterogeneous graph neural network.

Authors: Fan J Yang J Gu Z et al.

Source: Neural networks : the official journal of the International Neural Network Society [Neural Netw] 2025 Nov; Vol. 191, pp. 107743. Date of Electronic Publication: 2025 Jun 21.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: United States NLM ID: 8805018 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2782 (Electronic) Linking ISSN: 08936080 NLM ISO Abbreviation: Neural Netw Subsets: MEDLINE

MeSH Terms: Neural Networks, Computer* , Machine Learning*, Humans ; Algorithms ; Graph Neural Networks

Sports injury risk prediction based on temporal graph encoding and graph neural networks: A cross-sport transfer learning framework.

Authors: Fang D Chen C

Source: Scientific reports [Sci Rep] 2025 Oct 28; Vol. 15 (1), pp. 37656. Date of Electronic Publication: 2025 Oct 28.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH Terms: Athletic Injuries*/epidemiology , Neural Networks, Computer*, Humans ; Risk Factors ; Athletes ; Male ; Machine Learning ; Risk Assessment/methods ; Female ; Sports ; Graph Neural Networks

Toxigraphnet: a graph neural network framework for precise toxicity prediction of drug molecules.

Authors: Chotaliya M Agrawal SS

Source: Journal of computer-aided molecular design [J Comput Aided Mol Des] 2025 Oct 24; Vol. 39 (2), pp. 101. Date of Electronic Publication: 2025 Oct 24.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Netherlands NLM ID: 8710425 Publication Model: Electronic Cited Medium: Internet ISSN: 1573-4951 (Electronic) Linking ISSN: 0920654X NLM ISO Abbreviation: J Comput Aided Mol Des Subsets: MEDLINE

MeSH Terms: Neural Networks, Computer* , Drug-Related Side Effects and Adverse Reactions*, Pharmaceutical Preparations/chemistry ; Quantitative Structure-Activity Relationship ; Humans ; Algorithms ; Lethal Dose 50 ; Graph Neural Networks

Frequency Self-Adaptation Graph Neural Network for Unsupervised Graph Anomaly Detection.

Authors: Gu M Yang G Zheng Z et al.

Source: Neural networks : the official journal of the International Neural Network Society [Neural Netw] 2025 Oct; Vol. 190, pp. 107612. Date of Electronic Publication: 2025 May 27.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: United States NLM ID: 8805018 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2782 (Electronic) Linking ISSN: 08936080 NLM ISO Abbreviation: Neural Netw Subsets: MEDLINE

MeSH Terms: Neural Networks, Computer* , Unsupervised Machine Learning*, Humans ; Algorithms ; Graph Neural Networks

Fast Heterogeneous Graph Neural Network Generation via Meta Contrastive Learning.

Authors: Wu J Xu Z Qiao S

Source: Neural networks : the official journal of the International Neural Network Society [Neural Netw] 2025 Dec; Vol. 192, pp. 107727. Date of Electronic Publication: 2025 Aug 05.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: United States NLM ID: 8805018 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2782 (Electronic) Linking ISSN: 08936080 NLM ISO Abbreviation: Neural Netw Subsets: MEDLINE

MeSH Terms: Neural Networks, Computer* , Machine Learning*, Algorithms ; Humans ; Graph Neural Networks

Transfer learning with graph neural networks for pressure estimation in monitoring-limited water distribution networks.

Authors: Wang J Fu G Savic D

Source: Water research [Water Res] 2025 Dec 01; Vol. 287 (Pt B), pp. 124475. Date of Electronic Publication: 2025 Aug 25.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: England NLM ID: 0105072 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2448 (Electronic) Linking ISSN: 00431354 NLM ISO Abbreviation: Water Res Subsets: MEDLINE

MeSH Terms: Neural Networks, Computer* , Water Supply* , Environmental Monitoring*/methods, Graph Neural Networks

Identification of potent inhibitors of potential VEGFR2: a graph neural network-based virtual screening and in vitro study.

Authors: Hou S Diao S He Y et al.

Source: Journal of enzyme inhibition and medicinal chemistry [J Enzyme Inhib Med Chem] 2025 Dec; Vol. 40 (1), pp. 2518192. Date of Electronic Publication: 2025 Jun 20.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: England NLM ID: 101150203 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1475-6374 (Electronic) Linking ISSN: 14756366 NLM ISO Abbreviation: J Enzyme Inhib Med Chem Subsets: MEDLINE

MeSH Terms: Vascular Endothelial Growth Factor Receptor-2*/antagonists & inhibitors , Vascular Endothelial Growth Factor Receptor-2*/metabolism , Neural Networks, Computer* , Protein Kinase Inhibitors*/pharmacology , Protein Kinase Inhibitors*/chemistry , Protein Kinase Inhibitors*/chemical synthesis, Humans ; Structure-Activity Relationship ; Molecular Structure ; Dose-Response Relationship, Drug ; Molecular Docking Simulation ; Drug Evaluation, Preclinical ; Molecular Dynamics Simulation ; Graph Neural Networks

An interpretable geometric graph neural network for enhancing the generalizability of drug-target interaction prediction.

Authors: Xiong A Luo Z Xia Y et al.

Source: BMC biology [BMC Biol] 2025 Nov 26; Vol. 23 (1), pp. 350. Date of Electronic Publication: 2025 Nov 26.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

MeSH Terms: Neural Networks, Computer* , Drug Discovery*/methods, Deep Learning ; Proteins/chemistry ; Proteins/metabolism ; Humans ; SARS-CoV-2 ; Graph Neural Networks