Výsledky vyhledávání - "Genomics and Bioinformatics"

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Autoři: Francisco J. Pardo-Palacios Dingjie Wang Fairlie Reese a další

Přispěvatelé: Francisco J. Pardo-Palacios Dingjie Wang Fairlie Reese a další

Zdroj: Nat Methods
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Nature Methods, vol 21, iss 7

Témata: 0301 basic medicine, Technology, RNA-Seq (mesh), 3102 Bioinformatics and Computational Biology (for-2020), 02 engineering and technology, 11 Medical and Health Sciences (for), Medical and Health Sciences, 3105 Genetics (for-2020), Mice, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, 31 Biological sciences (for-2020), Animals (mesh), RNA-Seq, Developmental Biology (science-metrix), Humans (mesh), Computer and information sciences, Generic health relevance (hrcs-hc), Mice (mesh), RNA sequencing, Biological Sciences, Gene expression profiling, 06 Biological Sciences (for), Sequence annotation, Registered Report, RNA (mesh), 10 Technology (for), Sequence Analysis, Biotechnology, 0206 medical engineering, Bioinformatics and Computational Biology, RNA sequence, Biotechnology (rcdc), 03 medical and health sciences, Supercomputadors, Molecular Sequence Annotation (mesh), Genetics, Humans, Animals, Biochemistry, cell and molecular biology, 31 Biological Sciences (for-2020), Genetics (rcdc), Sequence Analysis, RNA, Gene Expression Profiling, Human Genome, Molecular Sequence Annotation, Transcriptome (mesh), Human Genome (rcdc), Gene Expression Profiling (mesh), RNA, Generic health relevance, Transcriptome, Genomics and bioinformatics, Software, Developmental Biology

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38849569
http://hdl.handle.net/10138/577347
https://hdl.handle.net/2117/410550
https://doi.org/10.1038/s41592-024-02298-3
https://escholarship.org/uc/item/2hg7004n
https://escholarship.org/content/qt2hg7004n/qt2hg7004n.pdf

Germline NPAT inactivating variants as cause of hereditary colorectal cancer

Autoři: Mariona Terradas Stephanie A. Schubert Julen Viana-Errasti a další

Přispěvatelé: Mariona Terradas Stephanie A. Schubert Julen Viana-Errasti a další

Zdroj: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Témata: Adult, Male, Middle Aged, Colorectal cancer, Colorectal Neoplasms, Hereditary Nonpolyposis, Pedigree, 3. Good health, Loss of Function Mutation, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Humans, Female, Colorectal Neoplasms, Cancer genetics, Genomics and bioinformatics, Germ-Line Mutation, Aged

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38778081
https://hdl.handle.net/1887/3764674

Dating the origin of a viral domestication event in parasitoid wasps attacking Diptera

Autoři: Guinet, Benjamin Vogel, Jonathan Kacem Haddj El Mrabet, Nabila a další

Přispěvatelé: Guinet, Benjamin Vogel, Jonathan Kacem Haddj El Mrabet, Nabila a další

Zdroj: Proc Biol Sci

Témata: Genes, Viral, Evolution, Wasps, HGT, genomics evolution bioinformatics endogenous viral elements filamentovirus parasitoid wasp HGT Cynipoidea palaeovirology, Insect Viruses, bioinformatics endogenous viral elements, Biological Evolution, [SDV] Life Sciences [q-bio], Domestication, palaeovirology, evolution, filamentovirus, genomics, Cynipoidea, Animals, parasitoid wasp, Phylogeny

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39837514

Fecal Virome of Southeastern Maned Sloth (Bradypus crinitus) (Pilosa: Bradypodidae)

Autoři: Amanda Coimbra Mirela D’arc Filipe Romero Rebello Moreira a další

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 48, Iss 2 (2025)

Témata: Genomics and Bioinformatics, Retroviridae, Genetics, gut microbiome, Southeastern Maned Sloth, QH426-470, Virosphere, Papillomaviridae

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40341309
https://doaj.org/article/7c41eb0ce8544292b38f931b10386101

Yaravirus brasiliense genomic structure analysis and its possible influence on the metabolism

Autoři: Ana Karoline Nunes-Alves Jônatas Santos Abrahão Sávio Torres de Farias

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 48, Iss 1 (2025)

Témata: viral evolution, Genomics and Bioinformatics, genetic structure, Genetics, citric acid cycle, QH426-470, Auxiliary metabolic genes

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39918235
https://doaj.org/article/d144d1e3d1cd4890837cf8f4000d5aec

Chronic lymphocytic leukemia patient-derived xenografts recapitulate clonal evolution to Richter transformation

Autoři: Heribert Playa-Albinyana Fabian Arenas Romina Royo a další

Přispěvatelé: Heribert Playa-Albinyana Fabian Arenas Romina Royo a další

Zdroj: Leukemia
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Témata: Prognosis, Richter transformation (RT), Leukemia, Lymphocytic, Chronic, B-Cell, Chronic lymphocytic leukemia (CLL), Article, 3. Good health, Clonal Evolution, Mice, Cell Transformation, Neoplastic, B-cell neoplasm, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Humans, Animals, Heterografts, Lymphoma, Large B-Cell, Diffuse, Genomics and bioinformatics

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38017105

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Autoři: Drew Neavin Anne Senabouth Himanshi Arora a další

Přispěvatelé: Drew Neavin Anne Senabouth Himanshi Arora a další

Zdroj: Genome Biol
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Genome Biology, Vol 25, Iss 1, Pp 1-24 (2024)

Témata: 0301 basic medicine, 0303 health sciences, Genetic demultiplexing, QH301-705.5, Sequence Analysis, RNA, Method, Doublet detecting, QH426-470, 03 medical and health sciences, Single-cell analysis, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Genetics, Humans, Biology (General), Single-Cell Analysis, Genomics and bioinformatics

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38622708
https://doaj.org/article/7209fadf8e984cfb87325f01f83f0d88
https://research.rug.nl/en/publications/ae1ae994-d066-498a-a60b-7bbc041a8dcb
https://doi.org/10.1186/s13059-024-03224-8
https://hdl.handle.net/11370/ae1ae994-d066-498a-a60b-7bbc041a8dcb

Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture

Autoři: Marcet-Houben, Marina Cruz, Fernando Gómez-Garrido, Jéssica a další

Přispěvatelé: Marcet-Houben, Marina Cruz, Fernando Gómez-Garrido, Jéssica a další

Zdroj: mSystems
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
mSystems, Vol 9, Iss 3 (2024)
msystems

Témata: population genomics, Comparative genomics, comparative genomics, Admixture, Genomics, 15. Life on land, Pinus, Microbiology, plant pathogen, QR1-502, Ascomycota, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Lecanosticta acicola, Plant pathogen, admixture, Humans, Needle blight, needle blight, Population genomics, Genomics and bioinformatics, Research Article, Genome-Wide Association Study

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38364101
https://doaj.org/article/a737c9dffd1b4fd1bdbf724c65b8b697
https://hdl.handle.net/2117/410183
https://doi.org/10.1128/msystems.00928-23
https://hdl.handle.net/2117/409366
https://doi.org/10.1128/msystems.00928-23

System-level analysis of genes mutated in muscular dystrophies reveals a functional pattern associated with muscle weakness distribution

Autoři: Ozan Ozisik Svetlana Gorokhova Mathieu Cerino a další

Přispěvatelé: Ozan Ozisik Svetlana Gorokhova Mathieu Cerino a další

Zdroj: Sci Rep
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Scientific Reports, Vol 14, Iss 1, Pp 1-10 (2024)
Scientific Reports

Témata: 0301 basic medicine, 0303 health sciences, Muscle Weakness, Science, Computational Biology, [SDV.GEN.GH] Life Sciences [q-bio]/Genetics/Human genetics, Muscular dystrophy, Article, Muscular Dystrophies, Computational biology and bioinformatics, Genòmica, 03 medical and health sciences, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Mutation, Medicine, Humans, Gene Regulatory Networks, Systems biology, Muscle, Skeletal, Genomics and bioinformatics

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38755190
https://doaj.org/article/0e56696c26d047e4ac070b18adefc3e4

DNA copy number profiles and systems biology connect chromatin remodeling and DNA repair in high-risk neuroblastoma

Autoři: Thatyanne Gradowski F. da C. do Nascimento Joice de Faria Poloni Mateus Eduardo de Oliveira Thomazini a další

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 3 (2024)

Témata: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, biological networks, Genomics and Bioinformatics, drug resistance, Pediatric cancer, Genetics, QH426-470, chemotherapy, DNA repair

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39356132
https://doaj.org/article/aeb691d4cc7642b5b7d0c9da99f5becc

Comparative structural studies on Bovine papillomavirus E6 oncoproteins: Novel insights into viral infection and cell transformation from homology modeling and molecular dynamics simulations

Autoři: Lucas Alexandre Barbosa de Oliveira Santos Tales de Albuquerque Leite Feitosa Marcus Vinicius de Aragão Batista

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 3 (2024)

Témata: 0301 basic medicine, Bovine papillomavirus, Genomics and Bioinformatics, 0303 health sciences, 03 medical and health sciences, CBP/p300, hMCM7, E6 oncoprotein, Genetics, molecular dynamics simulations, QH426-470, 3. Good health

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39136577
https://doaj.org/article/9dccb6c92b0c41e6b502f3d86cf18fde

Mitochondrion genomes of seven species of the endangered genus Sporophila (Passeriformes: Thraupidae)

Autoři: Amanda Alves de Melo-Ximenes Leonardo Carlos Jeronimo Corvalán Larissa Resende Carvalho a další

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 1 (2024)

Témata: 0301 basic medicine, Genomics and Bioinformatics, 0303 health sciences, 03 medical and health sciences, mitogenome, mtDNA, birds, Genetics, QH426-470, phylogeny, Aves

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38578013
https://doaj.org/article/358bb6cf442240c2965dff73fb3655ab

Noncontiguous operon atlas for the Staphylococcus aureus genome

Autoři: Pablo Iturbe Alvaro San Martín Hiroshi Hamamoto a další

Přispěvatelé: Pablo Iturbe Alvaro San Martín Hiroshi Hamamoto a další

Zdroj: Microlife
Academica-e. Repositorio Institucional de la Universidad Pública de Navarra
Universidad Pública de Navarra
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Témata: Staphylococcus aureus, Noncontiguous operon, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Antisense transcription, Excludon, Overlapping transcription, Menaquinone synthesis, Genomics and bioinformatics, Research Article, 3. Good health

Popis souboru: application/pdf

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38651166
https://academica-e.unavarra.es/handle/2454/48318
https://hdl.handle.net/2117/409363
https://doi.org/10.1093/femsml/uqae007

The complete mitogenome of Argentina brasiliensis Kobyliansky, 2004 and a phylogenetic analyses of the order Argentiniformes

Autoři: Claudio Oliveira Heloísa De Cia Caixeta Marcelo Roberto Souto de Melo

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 4 (2024)

Témata: fish, Genomics and Bioinformatics, mtDNA, systematic, Genetics, QH426-470, biodiversity, deep-sea fauna

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39656075
https://doaj.org/article/b84fbc5470444f3eac8500aa528101c8

The first complete mitochondrial genome of sesame (Sesamum indicum L.)

Autoři: Mingcheng Wang Rui Li Xuchen Yang

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 4 (2024)

Témata: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, PacBio high-fidelity sequencing, Genomics and Bioinformatics, mitogenome assembly and annotation, Genetics, QH426-470, multi-chromosomal mitogenome structure, Sesame

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39621766
https://doaj.org/article/ad054daf96144911912f3d7164f129e8

Investigating the shared genetic architecture between breast and ovarian cancers

Autoři: Xuezhong Shi Anqi Bu Yongli Yang a další

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 2 (2024)

Témata: 0301 basic medicine, Genomics and Bioinformatics, 0303 health sciences, 03 medical and health sciences, genetic pleiotropy, Genetics, ovarian neoplasms, QH426-470, linkage disequilibrium, Genome-Wide Association Study, polymorphism, 3. Good health

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38626574
https://doaj.org/article/61a7ad0a55554647ba72936506f44812

BCL3 rearrangements in B-cell lymphoid neoplasms occur in two breakpoint clusters associated with different diseases

Autoři: Carbó Meix, Anna Guijarro, Francesca Wang, Luojun a další

Přispěvatelé: Carbó Meix, Anna Guijarro, Francesca Wang, Luojun a další

Zdroj: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Témata: Genòmica, Bioinformàtica, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, B-cell lymphoid neoplasms, Lymphoid leukemia, BCL3 rearrangements, Genomics and bioinformatics

Popis souboru: application/pdf

Přístupová URL adresa: https://hdl.handle.net/2117/405181
https://doi.org/10.3324/haematol.2023.283209

Structure-based prediction of protein-protein interaction network in rice

Autoři: Fangnan Sun Yaxin Deng Xiaosong Ma a další

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 1 (2024)

Témata: protein-protein interaction, 0301 basic medicine, Genomics and Bioinformatics, 0303 health sciences, 03 medical and health sciences, Genetics, interactome, Rice, QH426-470, protein docking

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38314883
https://doaj.org/article/59a748e5eaf142658f8c7074a6e36d9f

Performance of a Shotgun Prediction Model for Colorectal Cancer When Using 16S rRNA Sequencing Data

Autoři: Ramon, Elies Obón Santacana, Mireia Khannous Lleiffe, Olfat a další

Přispěvatelé: Ramon, Elies Obón Santacana, Mireia Khannous Lleiffe, Olfat a další

Zdroj: UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)

Témata: 16S, Predictive model, Simulació per ordinador, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Gut microbiota, Metagenomics, Microbial signatur, Shotgun, Genomics and bioinformatics, Colon cancer

Popis souboru: application/pdf

Přístupová URL adresa: https://hdl.handle.net/2117/409365

Genomic characterization of SNW-1, a novel prophage of the deep-sea vent chemolithoautotroph Sulfurimonas indica NW79

Autoři: Li Xiaofeng Cheng Ruolin Zhang Chuanxi a další

Zdroj: Genet Mol Biol
Genetics and Molecular Biology, Vol 47, Iss 2 (2024)

Témata: 0301 basic medicine, Genomics and Bioinformatics, 03 medical and health sciences, prophage, 0206 medical engineering, Genetics, Campylobacterota, phylogenetic analysis, 02 engineering and technology, 14. Life underwater, QH426-470, Sulfurimonas indica

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39093930
https://doaj.org/article/0d9e5020d3294edb8b9ca77bddeab7f3