Search Results - "GENOMES"

Porcine circovirus type 2 (PCV2) genomic diversity in Canadian swine diagnostic samples collected from 2021 to 2023: Highlighting PCV2d and PCV2e genotypes.

Alternate Title: Diversité génomique du circovirus porcin de type 2 (PCV2) à partir d'échantillons diagnostiques porcins du Canada prélevés de 2021 à 2023 : mise en évidence des génotypes PCV2d et PCV2e.

Authors: Koszegi, Marika Provost, Chantale Grenier St-Sauveur, Valérie et al.

Source: Canadian Veterinary Journal / Revue Vétérinaire Canadienne. Apr2025, Vol. 66 Issue 4, p440-445. 6p.

Subjects: Whole genome sequencing, Viral genomes, Sampling (Process), Genotypes, Symptoms

The impact of telomere-to-telomere genome assembly in the plant pan-genomics era.

Authors: Yuta Aoyagi Blue Hideaki Iimura Sato, Mitsuhiko P. et al.

Source: Breeding Science. 2025, Vol. 75 Issue 1, p3-12. 10p.

Subjects: Gene mapping, Plant genomes, Pan-genome, Genomes, Species

Emergence of a novel porcine pestivirus with potential for cross-species transmission in China, 2023.

Authors: Deng, Li-shuang Xu, Tong Xu, Zhi-wen et al.

Source: Veterinary Research. 2/7/2025, Vol. 56 Issue 1, p1-14. 14p.

Subjects: Animal culture, Viral genomes, Animal experimentation, Piglets, Pulmonary edema

DPV pUL15 possesses a potential NLS, which is important for the location of the terminase complex and for viral proliferation and genome cleavage.

Authors: Yang, Qiao Feng, Yaya Liu, Lizhen et al.

Source: Veterinary Research. 1/7/2025, Vol. 56 Issue 1, p1-14. 14p.

Subjects: Medical sciences, Viral genomes, Medical microbiology, Recombinant viruses, Viral proteins

Packing and ejection of a semiflexible polymer in a capsid: Effect of helicity.

Authors: Dhali, Soham Upadhyay, Gokul Chaudhuri, Abhishek et al.

Source: Journal of Chemical Physics; 10/28/2025, Vol. 163 Issue 16, p1-11, 11p

Subject Terms: CAPSIDS, POLYMERS, VIRAL DNA, VIRAL genomes, STRUCTURAL analysis (Science)

Contamination of fungal genomes of Onygenaceae (Phylum Ascomycota) in public databases: incidence, detection, and impact.

Authors: Granados-Casas, Alan Omar Fernández-Bravo, Ana Stchigel, Alberto Miguel et al.

Source: BMC Genomics. 11/19/2025, Vol. 26 Issue 1, p1-15. 15p.

Subject Terms: *MICROBIAL contamination, *FUNGAL genomes, *ASCOMYCETES, *GENOMICS, *DATA integrity, *GENOMES, *PHYLOGENY

PSOSP uncovers pervasive SOS‐independent prophages with distinct genomic and host traits in bacterial genomes.

Authors: Hao, Yali Zhang, Mujie Lei, Xinjuan et al.

Source: iMeta. Oct2025, Vol. 4 Issue 5, p1-8. 8p.

Subject Terms: *MODEL organisms, *PROKARYOTIC genomes, *BACTERIAL genomes, *GENOMICS, *CONSERVED sequences (Genetics), *BIOINFORMATICS, *BACTERIA classification

Factors determining chromosomal localization of transposable elements in plants.

Authors: Kejnovsky, E. Jedlicka, P. Lexa, M. et al.

Source: Plant Biology. Oct2025, Vol. 27 Issue 6, p975-989. 15p.

Subject Terms: *PLANT genomes, *MOBILE genetic elements, *GENE mapping, *EPIGENETICS, *EVOLUTIONARY models, *GENOMES, *SPATIAL arrangement

TELLBASE: a novel tool of TELL-seq barcode-assisted scaffold assembler for bacterial genomes Open Access.

Authors: Li, Yutong Kuang, Tianlong Xu, Tao et al.

Source: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-13. 13p.

Subject Terms: BACTERIAL genomes, WHOLE genome sequencing, PLASMIDS, NUCLEOTIDE sequencing

SegFinder: an automated tool for identifying complete RNA virus genome segments through co-occurrence in multiple sequenced samples Open Access.

Authors: Liu, Xue Kong, Jianbin Shan, Yongtao et al.

Source: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-12. 12p.

Subject Terms: RNA viruses, VIRAL genomes, BIOINFORMATICS software, VIRUS identification, BIOINFORMATICS, METAGENOMICS

Genomic language models (gLMs) decode bacterial genomes for improved gene prediction and translation initiation site identification Open Access.

Authors: Akotenou, Genereux Allali, Achraf El

Source: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-14. 14p.

Subject Terms: *TRANSFORMER models, *MICROBIOLOGY, BACTERIAL genomes, GENOMICS, DEEP learning, GENE mapping, INITIATION factors (Biochemistry)

Analysis of tandem repeats in seven telomere-to-telomere primate genomes.

Authors: Sharma, Anukrati Sowpati, Divya Tej

Source: Journal of Genetics. Dec2025, Vol. 104 Issue 2, p1-7. 7p.

Subject Terms: *TANDEM repeats, *GENOMES, *WHOLE genome sequencing, *PATTERN perception, *NUCLEOTIDE sequencing, *NEURODEGENERATION, *GENOMICS, *MICROSATELLITE repeats

Unexplored diversity and molecular genetic signatures of chimallin and phuz encoding phages.

Authors: Sun, Shize Li, Cunyuan Sun, Jia et al.

Source: BMC Genomics. 11/17/2025, Vol. 26 Issue 1, p1-14. 14p.

Subject Terms: *VIRAL genomes, *BACTERIOPHAGES, *GENE mapping, *PHYLOGENY, *BIOLOGY, *VIRAL ecology

Plant MITEs: miniature transposable elements with major impacts.

Authors: Soundiramourtty, Abirami Mirouze, Marie

Source: Mobile DNA. 11/7/2025, Vol. 16 Issue 1, p1-11. 11p.

Subject Terms: *PLANT genomes, *GENE expression, *GENETIC variation, *CIS-regulatory elements (Genetics), *BIOCHEMISTRY, *MOBILE genetic elements

Creating New Forms of Hexaploid Triticale Associating Complete R and D Genomes.

Authors: Bernard, Michel Bernard, Sylvie Badaeva, Ekaterina et al.

Source: Biology (2079-7737). Nov2025, Vol. 14 Issue 11, p1632. 10p.

Subject Terms: *TRITICALE, *GENOMES, *INTROGRESSION (Genetics), *DISEASE resistance of plants, *GENOME editing, *POLYPLOIDY, *PLANT species

Draft Genome Assembly of Parnassius epaphus Provides New Insights into Transposable Elements That Drive Genome Expansion in Alpine Parnassius butterflies.

Authors: Rong, Wantao Wei, Nan Song, Jing et al.

Source: Diversity (14242818). Nov2025, Vol. 17 Issue 11, p794. 20p.

Subject Terms: *MOBILE genetic elements, *GENOMES, *GENETIC variation, *PAPILIONIDAE, *EXTREME environments, *NUCLEOTIDE sequencing, *BUTTERFLIES

Geographic Terms: TIBETAN Plateau

Ancient stickleback genomes reveal the early stages of parallel adaptation Open Access.

Authors: Laine, Jan Nickel, Jana Romundset, Anders et al.

Source: Evolution. Nov2025, Vol. 79 Issue 11, p2446-2459. 14p.

Subject Terms: *THREESPINE stickleback, *GENOMES, *LOCUS (Genetics), *FRESHWATER ecology, *COEVOLUTION, *GENES, *GENETIC engineering

MITE Annotation and Landscape in 207 Plant Genomes Reveal Their Evolutionary Dynamics and Functional Roles.

Authors: Gao, Jie Yang, Long‐Long Wang, Yi‐Ran et al.

Source: Molecular Ecology Resources. Nov2025, Vol. 25 Issue 8, p1-18. 18p.

Subject Terms: *PLANT genomes, *MOBILE genetic elements, *FUNCTIONAL genomics, *MOLECULAR phylogeny, *MICRORNA, *EVOLUTIONARY models, *GENE expression

Expanded gut microbial genomes from Chinese populations reveal population-specific genomic features related to human physiological traits.

Authors: Dong, Quanbin Ma, Beining Zhou, Xiaofeng et al.

Source: Genome Medicine. 10/31/2025, Vol. 17 Issue 1, p1-18. 18p.

Subject Terms: *GUT microbiota, *MICROBIAL genomes, *SOCIAL determinants of health, *CHINESE people, *BIOMARKERS, *MICROBIAL diversity, *PHYSICAL characteristics (Human body)

Geographic Terms: CHINA, EAST Asia

Topological Sequence Analysis of Genomes: Category Theory Approaches.

Authors: Liu, Jian Shen, Li Zia, Mushal et al.

Source: Journal of Computational Biophysics & Chemistry. Oct2025, p1-14. 14p.

Subject Terms: *GENOMES, *MATHEMATICAL category theory, *HOMOLOGY theory, *PHYLOGENY, *SARS-CoV-2, *DNA-protein interactions, *MATHEMATICAL models, *SEQUENCE alignment