Suchergebnisse - "GENE expression profiling"

Cost-Effective Method for Using Cross-Species Spike-In RNA for Normalization and Quantification in Polysome Profiling Experiments.

Autoren: Bhattarai K Slade A Holcik M

Quelle: Genes [Genes (Basel)] 2025 Nov 10; Vol. 16 (11). Date of Electronic Publication: 2025 Nov 10.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101551097 Publication Model: Electronic Cited Medium: Internet ISSN: 2073-4425 (Electronic) Linking ISSN: 20734425 NLM ISO Abbreviation: Genes (Basel) Subsets: MEDLINE

MeSH-Schlagworte: Polyribosomes*/genetics , Polyribosomes*/metabolism , RNA, Fungal*/genetics , RNA*/genetics , Gene Expression Profiling*/methods , Gene Expression Profiling*/standards , Gene Expression Profiling*/economics, Humans ; Cost-Benefit Analysis ; RNA, Messenger/genetics ; bcl-X Protein/genetics ; Saccharomyces cerevisiae/genetics ; Reproducibility of Results

Transcriptome profiling of prostatic tumours from ENACT trial patients with or without enzalutamide.

Autoren: Handa N Shore ND Cooperberg MR et al.

Quelle: BJU international [BJU Int] 2025 Nov; Vol. 136 (5), pp. 920-929. Date of Electronic Publication: 2025 Jul 31.

Publikationsart: Clinical Trial, Phase II; Journal Article; Multicenter Study; Randomized Controlled Trial

Info zur Zeitschrift: Publisher: Blackwell Science Country of Publication: England NLM ID: 100886721 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1464-410X (Electronic) Linking ISSN: 14644096 NLM ISO Abbreviation: BJU Int Subsets: MEDLINE

MeSH-Schlagworte: Antineoplastic Agents*/therapeutic use , Gene Expression Profiling* , Phenylthiohydantoin*/analogs & derivatives , Phenylthiohydantoin*/therapeutic use , Prostatic Neoplasms*/genetics , Prostatic Neoplasms*/drug therapy , Prostatic Neoplasms*/therapy , Watchful Waiting*, Aged ; Humans ; Male ; Middle Aged ; Benzamides ; Nitriles ; Transcriptome

Clinical Utility of Combined Donor-Derived Cell-Free DNA and Peripheral Gene-Expression-Profiling in Heart Transplant Recipients.

Autoren: Moeller CM Valledor AF Oren D et al.

Quelle: Clinical transplantation [Clin Transplant] 2025 Oct; Vol. 39 (10), pp. e70340.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Munksgaard Country of Publication: Denmark NLM ID: 8710240 Publication Model: Print Cited Medium: Internet ISSN: 1399-0012 (Electronic) Linking ISSN: 09020063 NLM ISO Abbreviation: Clin Transplant Subsets: MEDLINE

MeSH-Schlagworte: Heart Transplantation*/adverse effects , Cell-Free Nucleic Acids*/blood , Cell-Free Nucleic Acids*/genetics , Graft Rejection*/diagnosis , Graft Rejection*/etiology , Graft Rejection*/blood , Graft Rejection*/genetics , Tissue Donors*/supply & distribution , Gene Expression Profiling*/methods , Biomarkers*/blood , Biomarkers*/analysis, Humans ; Female ; Male ; Middle Aged ; Follow-Up Studies ; Prognosis ; Transplant Recipients/statistics & numerical data ; Adult ; Graft Survival ; Retrospective Studies ; Risk Factors

Does RSClin provide additional information over classic clinico-pathologic scores (PREDICT 2.1, INFLUENCE 2.0, CTS5)?

Autoren: Beltran-Bless AA Pond GR Bayani J et al.

Quelle: Breast (Edinburgh, Scotland) [Breast] 2025 Oct; Vol. 83, pp. 104528. Date of Electronic Publication: 2025 Jul 04.

Publikationsart: Clinical Trial, Phase III; Journal Article; Multicenter Study; Randomized Controlled Trial

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 9213011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1532-3080 (Electronic) Linking ISSN: 09609776 NLM ISO Abbreviation: Breast Subsets: MEDLINE

MeSH-Schlagworte: Breast Neoplasms*/pathology , Breast Neoplasms*/drug therapy , Breast Neoplasms*/genetics , Gene Expression Profiling*/methods, Aged ; Female ; Humans ; Middle Aged ; Androstadienes/administration & dosage ; Androstadienes/therapeutic use ; Antineoplastic Combined Chemotherapy Protocols/therapeutic use ; Neoplasm Recurrence, Local ; Prognosis ; Proportional Hazards Models ; Risk Assessment/methods ; Tamoxifen/administration & dosage ; Tamoxifen/therapeutic use

Microcosting Study of Genomic Profiling for Precision Cancer Medicine: Application from the National Infrastructure for Precision Diagnostics in Norway.

Autoren: Henkel PS Aas E Russnes HG et al.

Quelle: The Journal of molecular diagnostics : JMD [J Mol Diagn] 2025 Oct; Vol. 27 (10), pp. 945-953. Date of Electronic Publication: 2025 Jul 23.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: United States NLM ID: 100893612 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1943-7811 (Electronic) Linking ISSN: 15251578 NLM ISO Abbreviation: J Mol Diagn Subsets: MEDLINE

MeSH-Schlagworte: Neoplasms*/genetics , Neoplasms*/diagnosis , Precision Medicine*/economics , Precision Medicine*/methods , Genomics*/methods , Genomics*/economics , Gene Expression Profiling*/economics , Gene Expression Profiling*/methods, Humans ; Norway ; Cost-Benefit Analysis ; Costs and Cost Analysis

Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence.

Autoren: Jiménez I Alfaro M Garde E et al.

Quelle: New biotechnology [N Biotechnol] 2025 Dec 25; Vol. 90, pp. 236-256. Date of Electronic Publication: 2025 Oct 10.

Publikationsart: Journal Article; Comparative Study

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101465345 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1876-4347 (Electronic) Linking ISSN: 18716784 NLM ISO Abbreviation: N Biotechnol Subsets: MEDLINE

MeSH-Schlagworte: Lignin*/metabolism , Glycoside Hydrolases*/genetics , Glycoside Hydrolases*/metabolism , Transcriptome* , Basidiomycota*/enzymology , Basidiomycota*/genetics , Gene Expression Profiling* , Evolution, Molecular* , Fungal Proteins*/genetics , Fungal Proteins*/metabolism, Phylogeny ; Wood

DGEAR: a web-based application for differential gene expression analysis and downstream functional insights.

Autoren: Bardhan K Sarkar C

Quelle: Functional & integrative genomics [Funct Integr Genomics] 2025 Dec 05; Vol. 25 (1), pp. 264. Date of Electronic Publication: 2025 Dec 05.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Springer Country of Publication: Germany NLM ID: 100939343 Publication Model: Electronic Cited Medium: Internet ISSN: 1438-7948 (Electronic) Linking ISSN: 1438793X NLM ISO Abbreviation: Funct Integr Genomics Subsets: MEDLINE

MeSH-Schlagworte: Software* , Gene Expression Profiling*/methods , Transcriptome* , Computational Biology*/methods, Internet ; Algorithms ; Humans

Integrative metabolomic and transcriptomic analyses reveal flavonoid biosynthesis pathway in Eupatorium lindleyanum.

Autoren: Wang Y Wu J Zhou M et al.

Quelle: Scientific reports [Sci Rep] 2025 Dec 04; Vol. 15 (1), pp. 43151. Date of Electronic Publication: 2025 Dec 04.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

MeSH-Schlagworte: Flavonoids*/biosynthesis , Metabolomics*/methods , Gene Expression Profiling* , Biosynthetic Pathways*/genetics , Eupatorium*/metabolism , Eupatorium*/genetics , Transcriptome*, Gene Expression Regulation, Plant ; Transcription Factors/metabolism ; Transcription Factors/genetics ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Plant Leaves/metabolism ; Plant Leaves/genetics ; Metabolome

Isoformic: a workflow for transcript-level RNA-seq interpretation.

Autoren: Mamede I Queiroz LR Mata-Machado C et al.

Quelle: NAR genomics and bioinformatics [NAR Genom Bioinform] 2025 Dec 03; Vol. 7 (4), pp. lqaf176. Date of Electronic Publication: 2025 Dec 03 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 101756213 Publication Model: eCollection Cited Medium: Internet ISSN: 2631-9268 (Electronic) Linking ISSN: 26319268 NLM ISO Abbreviation: NAR Genom Bioinform Subsets: MEDLINE

MeSH-Schlagworte: RNA-Seq*/methods , Transcriptome* , Gene Expression Profiling*/methods , Sequence Analysis, RNA*/methods , Software*, Animals ; Humans ; Mice ; COVID-19/genetics ; COVID-19/virology ; Workflow ; Female ; Alternative Splicing ; Pre-Eclampsia/genetics ; SARS-CoV-2/genetics ; Pregnancy

Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms.

Autoren: Zheng H Sarkar H Raphael BJ

Quelle: Genome research [Genome Res] 2025 Dec 03; Vol. 35 (12), pp. 2734-2743. Date of Electronic Publication: 2025 Dec 03.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

MeSH-Schlagworte: Gene Expression Profiling*/methods , Transcriptome*, Humans ; Algorithms ; Genomics/methods ; Breast Neoplasms/genetics

Unified integration of spatial transcriptomics across platforms with LLOKI.

Autoren: Haber E Deshpande A Ma J et al.

Quelle: Genome research [Genome Res] 2025 Dec 03; Vol. 35 (12), pp. 2722-2733. Date of Electronic Publication: 2025 Dec 03.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

MeSH-Schlagworte: Transcriptome* , Gene Expression Profiling*/methods , Software*, Animals ; Mice ; Humans ; Single-Cell Analysis/methods ; Female ; Ovarian Neoplasms/genetics ; Brain/metabolism

Label-free selection of marker genes in single-cell and spatial transcriptomics with geneCover.

Autoren: Wang A Hicks S Geman D et al.

Quelle: Genome research [Genome Res] 2025 Dec 03; Vol. 35 (12), pp. 2744-2755. Date of Electronic Publication: 2025 Dec 03.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

MeSH-Schlagworte: Single-Cell Analysis*/methods , Transcriptome* , Gene Expression Profiling*/methods , Software*, Humans ; Algorithms ; Genetic Markers ; Animals ; Sequence Analysis, RNA/methods ; RNA-Seq

Transcriptomic analysis of Streptococcus pneumoniae serotype 1 reveals serotype-specific gene regulation.

Autoren: Pongchaikul P Hokamp K Kjos M et al.

Quelle: Microbial genomics [Microb Genom] 2025 Dec; Vol. 11 (12).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858 (Electronic) Linking ISSN: 20575858 NLM ISO Abbreviation: Microb Genom Subsets: MEDLINE

MeSH-Schlagworte: Streptococcus pneumoniae*/genetics , Streptococcus pneumoniae*/classification , Streptococcus pneumoniae*/pathogenicity , Gene Expression Profiling* , Gene Expression Regulation, Bacterial* , Transcriptome*, Serogroup ; Humans ; Pneumococcal Infections/microbiology ; Virulence/genetics ; Bacterial Proteins/genetics

Comparative transcriptomic analysis of retinal response to diverse cellular stresses reveals relative contributions of different cell death processes and signalling networks.

Autoren: Sarkar S Kannan R Panigrahi T et al.

Quelle: Cell death & disease [Cell Death Dis] 2025 Dec 01; Vol. 16 (1), pp. 876. Date of Electronic Publication: 2025 Dec 01.

Publikationsart: Journal Article; Comparative Study

Info zur Zeitschrift: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101524092 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-4889 (Electronic) NLM ISO Abbreviation: Cell Death Dis Subsets: MEDLINE

MeSH-Schlagworte: Gene Expression Profiling* , Signal Transduction*/genetics , Retina*/metabolism , Retina*/pathology , Transcriptome* , Retinal Degeneration*/genetics , Retinal Degeneration*/pathology , Retinal Degeneration*/metabolism, Animals ; Oxidative Stress/genetics ; Mice ; Mice, Inbred C57BL ; Cell Death/genetics ; Endoplasmic Reticulum Stress/genetics ; Retinal Pigment Epithelium/metabolism ; Retinal Pigment Epithelium/pathology ; Apoptosis/genetics

Long-read sequencing transcriptome quantification with lr-kallisto.

Autoren: Loving RK Sullivan DK Reese F et al.

Quelle: PLoS computational biology [PLoS Comput Biol] 2025 Dec 01; Vol. 21 (12), pp. e1013692. Date of Electronic Publication: 2025 Dec 01 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Transcriptome*/genetics , High-Throughput Nucleotide Sequencing*/methods , Gene Expression Profiling*/methods , Sequence Analysis, RNA*/methods, Humans ; Computational Biology/methods ; Software ; RNA-Seq/methods ; Single-Cell Analysis/methods

Deciphering Ferroptosis-Related Astrocyte Subpopulations and Diagnostic Biomarkers in Parkinson's Disease through RNA Transcriptomics.

Autoren: Gong Z Guo D Lin Y et al.

Quelle: Molecular neurobiology [Mol Neurobiol] 2025 Dec 01; Vol. 63 (1), pp. 221. Date of Electronic Publication: 2025 Dec 01.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Humana Press Country of Publication: United States NLM ID: 8900963 Publication Model: Electronic Cited Medium: Internet ISSN: 1559-1182 (Electronic) Linking ISSN: 08937648 NLM ISO Abbreviation: Mol Neurobiol Subsets: MEDLINE

MeSH-Schlagworte: Ferroptosis*/genetics , Parkinson Disease*/genetics , Parkinson Disease*/diagnosis , Parkinson Disease*/pathology , Astrocytes*/metabolism , Astrocytes*/pathology , Transcriptome*/genetics , Gene Expression Profiling*/methods , RNA*/genetics , RNA*/metabolism, Humans ; Biomarkers/metabolism ; Endoplasmic Reticulum Chaperone BiP ; Male ; Female

Small RNA transcriptome profiling reveals an essential role for miR-133b-3p_3 and miR-146b_1 in spring viraemia of carp virus infection in common carp (Cyprinus carpio L.).

Autoren: Liu R Liu H Du M et al.

Quelle: International journal of biological macromolecules [Int J Biol Macromol] 2025 Dec; Vol. 334 (Pt 1), pp. 149036. Date of Electronic Publication: 2025 Nov 17.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 7909578 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0003 (Electronic) Linking ISSN: 01418130 NLM ISO Abbreviation: Int J Biol Macromol Subsets: MEDLINE

MeSH-Schlagworte: MicroRNAs*/genetics , Carps*/genetics , Carps*/virology , Fish Diseases*/virology , Fish Diseases*/genetics , Gene Expression Profiling* , Rhabdoviridae*/physiology , Rhabdoviridae Infections*/genetics , Rhabdoviridae Infections*/veterinary , Rhabdoviridae Infections*/virology , Transcriptome* , Viremia*/genetics , Viremia*/virology , Viremia*/veterinary, Animals ; Gene Expression Regulation ; Host-Pathogen Interactions/genetics

SCR Organism: Carp sprivivirus

Integrated metabolome and transcriptome analyses reveal the metabolic regulation of Anoectochilus roxburghii (Wall.) Lindl. in response to light quality.

Autoren: Luo L Gu J Li Z et al.

Quelle: Analytical and bioanalytical chemistry [Anal Bioanal Chem] 2025 Dec; Vol. 417 (30), pp. 7045-7057. Date of Electronic Publication: 2025 Nov 10.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 101134327 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1618-2650 (Electronic) Linking ISSN: 16182642 NLM ISO Abbreviation: Anal Bioanal Chem Subsets: MEDLINE

MeSH-Schlagworte: Orchidaceae*/metabolism , Orchidaceae*/radiation effects , Orchidaceae*/genetics , Metabolome*/radiation effects , Light* , Gene Expression Profiling*/methods , Transcriptome*, Gene Expression Regulation, Plant/radiation effects ; Plant Leaves/metabolism ; Metabolomics/methods

Transcriptomic profiling reveals sex-specific gene expression patterns in Eriocheir sinensis gonads.

Autoren: Zhao F Liu H Shi Y et al.

Quelle: Comparative biochemistry and physiology. Part D, Genomics & proteomics [Comp Biochem Physiol Part D Genomics Proteomics] 2025 Dec; Vol. 56, pp. 101584. Date of Electronic Publication: 2025 Jul 19.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101270611 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-0407 (Electronic) Linking ISSN: 1744117X NLM ISO Abbreviation: Comp Biochem Physiol Part D Genomics Proteomics Subsets: MEDLINE

MeSH-Schlagworte: Brachyura*/genetics , Brachyura*/metabolism , Transcriptome* , Gene Expression Profiling* , Gonads*/metabolism , Testis*/metabolism , Ovary*/metabolism, Animals ; Male ; Female ; Sex Characteristics

HyperDiffuseNet: A Deep Hyperbolic Manifold Learning Method for Dimensionality Reduction in Spatial Transcriptomics.

Autoren: Qi J Shuai W Yanqi L et al.

Quelle: Journal of computational biology : a journal of computational molecular cell biology [J Comput Biol] 2025 Dec; Vol. 32 (12), pp. 1101-1120. Date of Electronic Publication: 2025 Sep 22.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 9433358 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8666 (Electronic) Linking ISSN: 10665277 NLM ISO Abbreviation: J Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Transcriptome*/genetics , Computational Biology*/methods , Deep Learning* , Gene Expression Profiling*/methods, Algorithms ; Humans ; Dimensionality Reduction