Suchergebnisse - "Data Curation methods"

Exploring Data Curation and Management in Physical Sciences: A Report from the PSDI Roadshow in Cambridge and Southampton

Autoren: Jasinska, Agnes Bruno, Ian Dingle, Cian et al.

Schlagwörter: Data Curation/methods, Physical sciences, Data Management/methods, Chemistry, Data Management/standards, Data Curation/standards, FOS: Physical sciences, Crystallography/standards, Physical science, Data Curation, Data Management

LitSumm: large language models for literature summarization of noncoding RNAs: large language models for literature summarization of noncoding RNAs

Autoren: Andrew Green Carlos Eduardo Ribas Nancy Ontiveros-Palacios et al.

Quelle: Database (Oxford)
Green, A, Ribas, C E, Ontiveros-Palacios, N, Griffiths-Jones, S, Petrov, A I, Bateman, A & Sweeney, B 2025, 'LitSumm : large language models for literature summarization of noncoding RNAs', Database: the journal of biological databases and curation, vol. 2025, baaf006. https://doi.org/10.1093/database/baaf006
Database

Schlagwörter: Data Curation/methods, Genomics (q-bio.GN), FOS: Computer and information sciences, RNA, Untranslated, Nucleic Acid, Computer Science - Artificial Intelligence, RNA, Untranslated/genetics, Untranslated/genetics, Databases, Artificial Intelligence (cs.AI), FOS: Biological sciences, RNA, Humans, Quantitative Biology - Genomics, Original Article, Databases, Nucleic Acid, Data Curation, Software

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39908113
http://arxiv.org/abs/2311.03056
https://research.manchester.ac.uk/en/publications/8bed735e-4c57-49b0-a918-2d78501ccf39
https://doi.org/10.1093/database/baaf006

DUVEL: an active-learning annotated biomedical corpus for the recognition of oligogenic combinations: an active-learning annotated biomedical corpus for the recognition of oligogenic combinations

Autoren: Charlotte Nachtegael Jacopo De Stefani Anthony Cnudde et al.

Weitere Verfasser: Charlotte Nachtegael Jacopo De Stefani Anthony Cnudde et al.

Quelle: Database (Oxford)

Schlagwörter: Data Curation/methods, Informatique générale, biomedical relation extraction dataset, Intelligence artificielle, Data Mining/methods, 3. Good health, genetic diseases, active learning, Databases, Genetic, Humans, Data Mining, Original Article, Supervised Machine Learning, Data Curation

Dateibeschreibung: 1 full-text file(s): application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38805753
https://biblio.vub.ac.be/vubir/(a14918e6-936a-4be8-a600-21b5b9549ca4).html
https://doi.org/10.1093/database/baae039
https://hdl.handle.net/20.500.14017/a14918e6-936a-4be8-a600-21b5b9549ca4

UniProt: the universal protein knowledgebase in 2021

Autoren: Bateman, Alex Martin, Maria-Jesus Orchard, Sandra et al.

Weitere Verfasser: Bateman, Alex Martin, Maria-Jesus Orchard, Sandra et al.

Quelle: Nucleic Acids Res
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
Nucleic acids symposium series, 49(D1):D480-D489
Nucleic Acids Research

Schlagwörter: Proteomics, 0301 basic medicine, COVID-19 / virology, Computational Biology / methods, Molecular Sequence Annotation / methods, Proteome, Knowledge Bases, Proteomics / methods, ddc:616.0757, SARS-CoV-2 / physiology, COVID-19 / epidemiology, User-Computer Interface, Viral Proteins, 03 medical and health sciences, SARS-CoV-2 / genetics, Data Curation / methods, Genetics, Viral Proteins / genetics, Database Issue, Humans, SARS-CoV-2 / metabolism, Databases, Protein, Pandemics, Data Curation, Proteome / metabolism, Proteome / genetics, Internet, 0303 health sciences, 616.0757, SARS-CoV-2, COVID-19 / prevention & control, COVID-19, Computational Biology, Molecular Sequence Annotation, 3. Good health, Viral Proteins / metabolism

Dateibeschreibung: application/pdf

Zugangs-URL: https://academic.oup.com/nar/article-pdf/49/D1/D480/35364103/gkaa1100.pdf
https://pubmed.ncbi.nlm.nih.gov/33237286
https://dblp.uni-trier.de/db/journals/nar/nar49.html#BatemanMOMAAABB21
https://doi.org/10.1093/nar/gkaa1100
https://academic.oup.com/nar/article/49/D1/D480/6006196
https://archive-ouverte.unige.ch/unige:159643
https://archive-ouverte.unige.ch/unige:159643
https://doi.org/10.1093/nar/gkaa1100
https://repository.publisso.de/resource/frl:6425514

Biocuration - mapping resources and needs.

Autoren: Holinski, A. Burke, M.L. Morgan, S.L. et al.

Schlagwörter: Computational Biology, Data Curation/methods, Data Mining, Humans, Biocuration, Biocuration tools, Bioinformatics, Career development, Life Sciences, Training needs

Dateibeschreibung: application/pdf

Relation: F1000Research; https://iris.unil.ch/handle/iris/131073; serval:BIB_5E47F5B26806

Verfügbarkeit: https://iris.unil.ch/handle/iris/131073
https://doi.org/10.12688/f1000research.25413.2

UniProt: the universal protein knowledgebase in 2021

Autoren: UniProt Consortium Teodoro, Douglas

Weitere Verfasser: UniProt Consortium Teodoro, Douglas

Quelle: ISSN: 0305-1048 ; Nucleic acids research, vol. 49, no. D1 (2021) p. D480-D489.

Schlagwörter: info:eu-repo/classification/ddc/616.0757, COVID-19 / epidemiology, COVID-19 / prevention & control, COVID-19 / virology, Computational Biology / methods, Data Curation / methods, Databases, Protein, Humans, Internet, Knowledge Bases, Molecular Sequence Annotation / methods, Pandemics, Proteome / genetics, Proteome / metabolism, Proteomics / methods, SARS-CoV-2 / genetics, SARS-CoV-2 / metabolism, SARS-CoV-2 / physiology, User-Computer Interface, Viral Proteins / genetics, Viral Proteins / metabolism

Relation: info:eu-repo/semantics/altIdentifier/pmid/33237286; info:eu-repo/semantics/dataset/url/https://www.uniprot.org/downloads; unige:159643

Verfügbarkeit: https://archive-ouverte.unige.ch/unige:159643

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources.

Autoren: Lee, K. Famiglietti, M.L. McMahon, A. et al.

Quelle: PLoS computational biology, vol. 14, no. 8, pp. e1006390

Schlagwörter: Data Curation/methods, Data Curation/statistics & numerical data, Databases, Genetic, Protein, Deep Learning, Genomics, Information Storage and Retrieval/methods, Knowledge Bases, Machine Learning, Publications

Dateibeschreibung: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/pmid/30102703; info:eu-repo/semantics/altIdentifier/eissn/1553-7358; info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_916AEEE29E4F0; https://serval.unil.ch/notice/serval:BIB_916AEEE29E4F; https://serval.unil.ch/resource/serval:BIB_916AEEE29E4F.P001/REF.pdf

Verfügbarkeit: https://serval.unil.ch/notice/serval:BIB_916AEEE29E4F
https://doi.org/10.1371/journal.pcbi.1006390
https://serval.unil.ch/resource/serval:BIB_916AEEE29E4F.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_916AEEE29E4F0

Triage by ranking to support the curation of protein interactions

Autoren: Mottin, Luc Pasche, Emilie Gobeill, Julien et al.

Quelle: ISSN: 1758-0463 ; Database, vol. 2017 (2017) bax040.

Schlagwörter: info:eu-repo/classification/ddc/576, Computational Biology/methods, Data Curation/methods, Data Mining/methods, Databases, Protein, Protein Interaction Mapping/methods, User-Computer Interface

Relation: info:eu-repo/semantics/altIdentifier/pmid/29220432; unige:102127

Verfügbarkeit: https://archive-ouverte.unige.ch/unige:102127

Triage by ranking to support the curation of protein interactions

Autoren: Patrick Ruch Pierre-André Michel Anne Gleizes et al.

Quelle: Database (Oxford)
Database, Vol. 2017 (2017) P. bax040
Database

Schlagwörter: Data Curation/methods, Protein Interaction Mapping/methods, 0301 basic medicine, 0206 medical engineering, Computational Biology, 02 engineering and technology, Computational Biology/methods, Data Mining/methods, User-Computer Interface, 03 medical and health sciences, Protein Interaction Mapping, Data Mining, Original Article, ddc:576, Databases, Protein, Data Curation

Dateibeschreibung: application/pdf

Zugangs-URL: https://academic.oup.com/database/article-pdf/doi/10.1093/database/bax040/19234641/bax040.pdf
https://pubmed.ncbi.nlm.nih.gov/29220432
https://f1000research.com/slides/6-471
http://bitem.hesge.ch/biblio/triage-ranking-support-curation-protein-interactions
http://bitem.hesge.ch/sites/default/files/biblio/bax040.pdf
https://archive-ouverte.unige.ch/unige:102127
https://dblp.uni-trier.de/db/journals/biodb/biodb2017.html#MottinPGLGMBGR17
https://arodes.hes-so.ch/record/2115/files/Mottin_2017_triage_by_ranking.pdf
https://doi.org/10.1093/database/bax040
https://archive-ouverte.unige.ch/unige:102127
https://doi.org/10.1093/database/bax040
https://archive-ouverte.unige.ch/unige:102127

Ten quick tips for biocuration

Autoren: Jane Lomax Melissa A. Haendel Drashtti Vasant et al.

Weitere Verfasser: Jane Lomax Melissa A. Haendel Drashtti Vasant et al.

Quelle: PLoS Comput Biol
PLoS Computational Biology, Vol 15, Iss 5, p e1006906 (2019)
PLOS Computational Biology, vol 15, iss 5
PLOS Computational Biology

Schlagwörter: 0301 basic medicine, Evolution, Bioinformatics, QH301-705.5, name=Genetics, name=Modelling and Simulation, Mathematical Sciences, Education, Databases, 03 medical and health sciences, Behavior and Systematics, Genetic, name=Ecology, Information and Computing Sciences, Databases, Genetic, Humans, Biology (General), Data Curation, Data Curation/methods, 0303 health sciences, Genetic/trends, name=Molecular Biology, Biological Sciences, name=Computational Theory and Mathematics, Databases as Topic/trends, Databases as Topic, name=Cellular and Molecular Neuroscience

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/31048830
https://doaj.org/article/c383af9e8d9943fcb3252192ba0235ad
https://discovery.dundee.ac.uk/ws/files/34227606/Final_Published_Version.pdf
https://dx.plos.org/10.1371/journal.pcbi.1006906
https://doi.org/10.1371/journal.pcbi.1006906
https://europepmc.org/abstract/MED/31048830
https://ohsu.pure.elsevier.com/en/publications/ten-quick-tips-for-biocuration
https://discovery.dundee.ac.uk/en/publications/ten-quick-tips-for-biocuration
https://escholarship.org/uc/item/75p8d329
https://escholarship.org/content/qt75p8d329/qt75p8d329.pdf

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Autoren: Thomas Hoffman Pavel A. Pevzner Ronnie G. Gavilan et al.

Weitere Verfasser: Thomas Hoffman Pavel A. Pevzner Ronnie G. Gavilan et al.

Quelle: Wang, M, Carver, J J, Pevzner, P, Mohiman, H, Bandeira, N, Phelan, V V, Sanchez, L M, Garg, N, Watrous, J, Luzzatto-Knaa, T, Frydenlund Michelsen, C, Jelsbak, L, Månsson, M, Klitgaard, A & Nielsen, K F 2016, ' Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking ', Nature Biotechnology, vol. 34, no. 8, pp. 828-837 . https://doi.org/10.1038/nbt.3597
Nature Biotechnology, Vol. 34, No 8 (2016) pp. 828-837
Nature Biotechnology, vol 34, iss 8
Nature Biotechnology (1087-0156) (Nature Publishing Group), 2016-08, Vol. 34, N. 8, P. 828-837
Wang, M, Carver, J J, Phelan, V V, Sanchez, L M, Garg, N, Peng, Y, Nguyen, D D, Watrous, J, Kapono, C A, Luzzatto-Knaan, T, Porto, C, Bouslimani, A, Melnik, A V, Meehan, M J, Liu, W T, Crüsemann, M, Boudreau, P D, Esquenazi, E, Sandoval-Calderón, M, Kersten, R D, Pace, L A, Quinn, R A, Duncan, K R, Hsu, C C, Floros, D J, Gavilan, R G, Kleigrewe, K, Northen, T, Dutton, R J, Parrot, D, Carlson, E E, Aigle, B, Michelsen, C F, Jelsbak, L, Sohlenkamp, C, Pevzner, P, Edlund, A, McLean, J, Piel, J, Murphy, B T, Gerwick, L, Liaw, C C, Yang, Y L, Humpf, H U, Maansson, M, Keyzers, R A, Sims, A C, Nielsen, K F, Zhang, C & Phapale, P 2016, 'Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking', Nature Biotechnology, vol. 34, no. 8, pp. 828-837. https://doi.org/10.1038/nbt.3597
Nature Biotechnology

Schlagwörter: 0301 basic medicine, Internationality, Biological Products/chemistry/classification, Information Dissemination/methods, Information Storage and Retrieval, Bioengineering, Chemical, Mass spectrometry data, Mass Spectrometry, Analytical Chemistry, Data driven, Knowledge base, Open Access, Databases, 03 medical and health sciences, Computational platforms and environments, [SDV.EE]Life Sciences [q-bio]/Ecology, Ms libraries, TA164, Tandem mass, High through-put characterization, Data Curation, Data Curation/methods, Mass Spectrometry/statistics & numerical data, Natural products, ddc:615, Biological Products, Mass spectrometry, Spectrometry, Information Storage and Retrieval/methods, Information Dissemination, 3. Good health, Information resources, [SDV.EE] Life Sciences [q-bio]/Ecology, environment, ZA, Chemical Sciences, Database Management Systems, Knowledge based systems, Generic health relevance, environment, Databases, Chemical

Dateibeschreibung: application/pdf; text

Zugangs-URL: https://www.nature.com/articles/nbt.3597.pdf
https://pubmed.ncbi.nlm.nih.gov/27504778
https://strathprints.strath.ac.uk/57605/1/Wang_etal_NB_2016_Sharing_and_community_curation_of_mass_spectrometry_data.pdf
https://ora.ox.ac.uk/objects/uuid:083d9dcc-b906-40ee-accf-4f6e72bb1b50
https://doi.org/10.1038/nbt.3597
http://hdl.handle.net/10033/620564
https://orbit.dtu.dk/en/publications/654f274b-e431-416a-9927-caa5ec428550
https://archive-ouverte.unige.ch/unige:116647
https://univ-rennes.hal.science/hal-01371824v1/document
https://doi.org/10.1038/nbt.3597
https://univ-rennes.hal.science/hal-01371824v1
https://escholarship.org/content/qt8q63m69f/qt8q63m69f.pdf
https://escholarship.org/uc/item/8q63m69f
https://archimer.ifremer.fr/doc/00408/51939/52574.zip
https://archimer.ifremer.fr/doc/00408/51939/
https://archimer.ifremer.fr/doc/00408/51939/52572.pdf
https://archimer.ifremer.fr/doc/00408/51939/52571.pdf
https://archimer.ifremer.fr/doc/00408/51939/52573.xlsx
https://pure.au.dk/portal/en/publications/72cfe2ae-d23b-4f88-ac7c-32ddd3eae013
https://doi.org/10.1038/nbt.3597
http://www.scopus.com/inward/record.url?scp=84981297901&partnerID=8YFLogxK

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Autoren: Wang, Mingxun Carver, Jeremy J Phelan, Vanessa V et al.

Weitere Verfasser: Wang, Mingxun Carver, Jeremy J Phelan, Vanessa V et al.

Quelle: ISSN: 1087-0156 ; Nature Biotechnology, vol. 34, no. 8 (2016) p. 828-837.

Schlagwörter: info:eu-repo/classification/ddc/615, Biological Products/chemistry/classification, Data Curation/methods, Database Management Systems, Databases, Chemical, Information Dissemination/methods, Information Storage and Retrieval/methods, Internationality, Mass Spectrometry/statistics & numerical data

Relation: info:eu-repo/semantics/altIdentifier/pmid/27504778; unige:116647

Verfügbarkeit: https://archive-ouverte.unige.ch/unige:116647