Search Results - "DNA reference database"

Establishing a COI DNA barcoding reference database for Taiwanese coastal fish species from egg and larvae specimens

Authors: Shao, Kwang-tsao Ko, Hui-Ling Chiu, Yung-Chieh et al.

Contributors: Shao, Kwang-tsao Ko, Hui-Ling Chiu, Yung-Chieh et al.

Source: 1247:207-216

Subject Terms: barcoding region, COI, DNA barcoding, DNA reference database, Edna, Fish eggs, Fish larvae, species identification

Access URL: https://www.biodiversitylibrary.org/part/432263

StrataSeq: A Workflow for Rapid Development of Molecular Databases for Hard‐To‐Identify Species

Authors: Anna K. Merges Peter Manning Dennis Baulechner et al.

Source: Ecology and Evolution, Vol 15, Iss 10, Pp n/a-n/a (2025)

Subject Terms: biodiversity monitoring, DNA reference database, habitat‐stratified sampling, morphological identification, morphospecies, species turnover, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7758

Access URL: https://doaj.org/article/2b9ede00c67d40efac96d837d191bdfc

DNA barcoding deep-water zooplankton from the Gulf of Alaska, North Pacific Ocean

Authors: Jennifer M. Questel Caitlin A. Smoot Allen G. Collins et al.

Source: Frontiers in Marine Science, Vol 12 (2025)

Subject Terms: COI, 16S, DNA reference database, Science, 18S, MetaZooGene, General. Including nature conservation, geographical distribution, QH1-199.5

Access URL: https://doaj.org/article/d773d3233a104b83bc5d98829380116d

Skmer: assembly-free and alignment-free sample identification using genome skims.

Authors: Sarmashghi, Shahab Bohmann, Kristine P Gilbert, M et al.

Source: Genome Biology. 20(1)

Subject Terms: Alignment-free, Assembly-free, DNA Barcoding, DNA reference database, Genome skimming, Second generation sequencing, Animals, Birds, DNA Barcoding, Taxonomic, Genome, Insect, Genomics, Models, Genetic, Phylogeny

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/93q3r730
https://escholarship.org/content/qt93q3r730/qt93q3r730.pdf

Figure 2 from: Shao K-T, Ko H-L, Chiu Y-C, Huang H-K, Chen Y-F, Chang Y-W (2025) Establishing a COI DNA barcoding reference database for Taiwanese coastal fish species from egg and larvae specimens. ZooKeys 1247: 207-216. https://doi.org/10.3897/zookeys.1247.151795

Authors: Shao, Kwang-Tsao Ko, Hui-Ling Chiu, Yung-Chieh et al.

Subject Terms: barcoding region, COI, DNA barcoding, DNA reference database, eDNA, fish eggs, fish larvae, species identification

Relation: https://zenodo.org/record/16673772; https://zenodo.org/communities/biosyslit/; https://zenodo.org/records/16673957; oai:zenodo.org:16673957; https://doi.org/10.3897/zookeys.1247.151795.figure2

Availability: https://doi.org/10.3897/zookeys.1247.151795.figure2
https://zenodo.org/records/16673957

Data Sheet 1_DNA barcoding deep-water zooplankton from the Gulf of Alaska, North Pacific Ocean.pdf

Authors: Jennifer M. Questel Caitlin A. Smoot Allen G. Collins et al.

Subject Terms: Marine Biology, 18S, 16S, COI, DNA reference database, MetaZooGene

Availability: https://doi.org/10.3389/fmars.2025.1515048.s004
https://figshare.com/articles/dataset/Data_Sheet_1_DNA_barcoding_deep-water_zooplankton_from_the_Gulf_of_Alaska_North_Pacific_Ocean_pdf/28675697

Data Sheet 2_DNA barcoding deep-water zooplankton from the Gulf of Alaska, North Pacific Ocean.pdf

Authors: Jennifer M. Questel Caitlin A. Smoot Allen G. Collins et al.

Subject Terms: Marine Biology, 18S, 16S, COI, DNA reference database, MetaZooGene

Availability: https://doi.org/10.3389/fmars.2025.1515048.s002
https://figshare.com/articles/dataset/Data_Sheet_2_DNA_barcoding_deep-water_zooplankton_from_the_Gulf_of_Alaska_North_Pacific_Ocean_pdf/28675703

Data Sheet 3_DNA barcoding deep-water zooplankton from the Gulf of Alaska, North Pacific Ocean.pdf

Authors: Jennifer M. Questel Caitlin A. Smoot Allen G. Collins et al.

Subject Terms: Marine Biology, 18S, 16S, COI, DNA reference database, MetaZooGene

Availability: https://doi.org/10.3389/fmars.2025.1515048.s003
https://figshare.com/articles/dataset/Data_Sheet_3_DNA_barcoding_deep-water_zooplankton_from_the_Gulf_of_Alaska_North_Pacific_Ocean_pdf/28675700

Table 1_DNA barcoding deep-water zooplankton from the Gulf of Alaska, North Pacific Ocean.xlsx

Authors: Jennifer M. Questel Caitlin A. Smoot Allen G. Collins et al.

Subject Terms: Marine Biology, 18S, 16S, COI, DNA reference database, MetaZooGene

Availability: https://doi.org/10.3389/fmars.2025.1515048.s001
https://figshare.com/articles/dataset/Table_1_DNA_barcoding_deep-water_zooplankton_from_the_Gulf_of_Alaska_North_Pacific_Ocean_xlsx/28675706

Figure 1 from: Shao K-T, Ko H-L, Chiu Y-C, Huang H-K, Chen Y-F, Chang Y-W (2025) Establishing a COI DNA barcoding reference database for Taiwanese coastal fish species from egg and larvae specimens. ZooKeys 1247: 207-216. https://doi.org/10.3897/zookeys.1247.151795

Authors: Shao, Kwang-Tsao Ko, Hui-Ling Chiu, Yung-Chieh et al.

Subject Terms: barcoding region, COI, DNA barcoding, DNA reference database, eDNA, fish eggs, fish larvae, species identification

Relation: https://zenodo.org/record/16673772; https://zenodo.org/communities/biosyslit/; https://zenodo.org/records/16673953; oai:zenodo.org:16673953; https://doi.org/10.3897/zookeys.1247.151795.figure1

Availability: https://doi.org/10.3897/zookeys.1247.151795.figure1
https://zenodo.org/records/16673953