Výsledky vyhľadávania - "Catalytic Domain"

M3Site: multiclass multimodal learning for protein active site identification and classification.

Autori: Ouyang S Luo Y Cai H a ďalší

Zdroj: Briefings in bioinformatics [Brief Bioinform] 2025 Nov 01; Vol. 26 (6).

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

Výrazy zo slovníka MeSH: Proteins*/chemistry , Proteins*/classification , Proteins*/metabolism , Catalytic Domain* , Computational Biology*/methods , Software* , Machine Learning*, Databases, Protein ; Neural Networks, Computer ; Algorithms

Dynamic catalytic domain plasticity governs substrate specificity in industrial serine proteases: Structural and functional implications.

Autori: Yang Y Zhang B Zhang J

Zdroj: International journal of biological macromolecules [Int J Biol Macromol] 2025 Nov; Vol. 331 (Pt 1), pp. 148374. Date of Electronic Publication: 2025 Oct 17.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 7909578 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0003 (Electronic) Linking ISSN: 01418130 NLM ISO Abbreviation: Int J Biol Macromol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Catalytic Domain* , Serine Proteases*/chemistry , Serine Proteases*/metabolism, Substrate Specificity ; Molecular Dynamics Simulation ; Molecular Docking Simulation ; Kinetics ; Protein Binding ; Hydrogen Bonding ; Endopeptidase K/chemistry ; Endopeptidase K/metabolism

ActSeek: fast and accurate search algorithm of active sites in alphafold database.

Autori: Castillo S Ollila OHS

Zdroj: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Aug 02; Vol. 41 (8).

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Výrazy zo slovníka MeSH: Algorithms* , Databases, Protein* , Catalytic Domain* , Software* , Proteins*/chemistry, Data Mining/methods ; Computational Biology/methods

htFuncLib: Designing Libraries of Active-site Multipoint Mutants for Protein Optimization.

Autori: Lipsh-Sokolik R Fleishman SJ

Zdroj: Journal of molecular biology [J Mol Biol] 2025 Aug 01; Vol. 437 (15), pp. 169011. Date of Electronic Publication: 2025 Feb 15.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Catalytic Domain*/genetics , Mutation* , Protein Engineering*/methods , Proteins*/genetics , Proteins*/chemistry , Software*, Models, Molecular ; Computational Biology/methods

Deciphering the bidirectional catalytic mechanism of HGPRT from Mycobacterium tuberculosis: Functional mapping of key active-site residues.

Autori: Lin C Liu Y Wan W a ďalší

Zdroj: International journal of biological macromolecules [Int J Biol Macromol] 2025 Aug; Vol. 320 (Pt 4), pp. 146122. Date of Electronic Publication: 2025 Jul 19.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 7909578 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0003 (Electronic) Linking ISSN: 01418130 NLM ISO Abbreviation: Int J Biol Macromol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Mycobacterium tuberculosis*/enzymology , Mycobacterium tuberculosis*/genetics , Catalytic Domain* , Hypoxanthine Phosphoribosyltransferase*/chemistry , Hypoxanthine Phosphoribosyltransferase*/metabolism , Hypoxanthine Phosphoribosyltransferase*/genetics , Biocatalysis* , Bacterial Proteins*/chemistry , Bacterial Proteins*/metabolism , Bacterial Proteins*/genetics, Molecular Dynamics Simulation

Identification of selective plant-derived natural carotenoid and flavonoids as the potential inhibitors of DHHC-mediated protein S- palmitoylation: an in silico study.

Autori: Chaturvedi S Pandya N Sadhukhan S a ďalší

Zdroj: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2025 Jul; Vol. 43 (10), pp. 5110-5123. Date of Electronic Publication: 2024 Feb 06.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Výrazy zo slovníka MeSH: Phytochemicals*/chemistry , Phytochemicals*/pharmacology , Biological Products*/chemistry , Biological Products*/pharmacology , Carotenoids*/chemistry , Carotenoids*/pharmacology , Flavonoids*/chemistry , Flavonoids*/pharmacology , Lipoylation* , Catalytic Domain* , Peptides*/chemistry , Peptides*/metabolism, Ligands ; Computer Simulation ; Models, Molecular ; Protein Structure, Tertiary ; Chemical Phenomena

ASMC: investigating the amino acid diversity of enzyme active sites.

Autori: Bailly T Elisée E Vallenet D

Zdroj: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Jun 02; Vol. 41 (6).

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Výrazy zo slovníka MeSH: Catalytic Domain* , Amino Acids*/chemistry , Software* , Enzymes*/chemistry , Enzymes*/metabolism , Computational Biology*/methods, Cluster Analysis ; Sequence Alignment ; Models, Molecular ; Sequence Analysis, Protein/methods ; Databases, Protein

¹ H, ¹³ C and ¹⁵ N backbone resonance assignment of the catalytic domain of human PTPN22.

Autori: Martin BT Clarkson MW Wu P a ďalší

Zdroj: Biomolecular NMR assignments [Biomol NMR Assign] 2025 Jun; Vol. 19 (1), pp. 175-181. Date of Electronic Publication: 2025 Apr 25.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Springer Country of Publication: Netherlands NLM ID: 101472371 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1874-270X (Electronic) Linking ISSN: 1874270X NLM ISO Abbreviation: Biomol NMR Assign Subsets: MEDLINE

Výrazy zo slovníka MeSH: Nuclear Magnetic Resonance, Biomolecular* , Catalytic Domain* , Protein Tyrosine Phosphatase, Non-Receptor Type 22*/chemistry, Humans ; Nitrogen Isotopes

Investigating the role of polar amino acids driven by evolution in the active site architecture of GH11 xylanase.

Autori: Li Z Chen M Tian W a ďalší

Zdroj: International journal of biological macromolecules [Int J Biol Macromol] 2025 Jun; Vol. 315 (Pt 1), pp. 144464. Date of Electronic Publication: 2025 May 20.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 7909578 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0003 (Electronic) Linking ISSN: 01418130 NLM ISO Abbreviation: Int J Biol Macromol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Catalytic Domain* , Endo-1,4-beta Xylanases*/chemistry , Endo-1,4-beta Xylanases*/genetics , Endo-1,4-beta Xylanases*/metabolism , Aspergillus niger*/enzymology , Aspergillus niger*/genetics , Evolution, Molecular* , Amino Acids*/chemistry , Amino Acids*/genetics, Mutagenesis, Site-Directed ; Models, Molecular ; Amino Acid Sequence ; Hydrogen-Ion Concentration ; Mutation

Backbone resonance assignment of the catalytic and ATP-binding domain of CpxA from Escherichia coli.

Autori: Deng J Zeng G Xia W a ďalší

Zdroj: Biomolecular NMR assignments [Biomol NMR Assign] 2025 Jun; Vol. 19 (1), pp. 59-62. Date of Electronic Publication: 2025 Feb 07.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Springer Country of Publication: Netherlands NLM ID: 101472371 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1874-270X (Electronic) Linking ISSN: 1874270X NLM ISO Abbreviation: Biomol NMR Assign Subsets: MEDLINE

Výrazy zo slovníka MeSH: Escherichia coli Proteins*/chemistry , Escherichia coli Proteins*/metabolism , Nuclear Magnetic Resonance, Biomolecular* , Adenosine Triphosphate*/metabolism , Escherichia coli*/enzymology , Protein Kinases*/chemistry , Protein Kinases*/metabolism , Catalytic Domain* , Biocatalysis*, Binding Sites ; Protein Domains

Structure of a DNA Glycosylase Bound to a Nicked T:G Mismatch-Containing DNA.

Autori: Ouzon-Shubeita H Barnes R Schmaltz LF a ďalší

Zdroj: Molecules (Basel, Switzerland) [Molecules] 2025 May 07; Vol. 30 (9). Date of Electronic Publication: 2025 May 07.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: MDPI Country of Publication: Switzerland NLM ID: 100964009 Publication Model: Electronic Cited Medium: Internet ISSN: 1420-3049 (Electronic) Linking ISSN: 14203049 NLM ISO Abbreviation: Molecules Subsets: MEDLINE

Výrazy zo slovníka MeSH: Thymine*/chemistry , Excision Repair* , Endodeoxyribonucleases*/chemistry , Endodeoxyribonucleases*/genetics , Thymine DNA Glycosylase*/chemistry , Thymine DNA Glycosylase*/genetics , Catalytic Domain*, Base Pair Mismatch ; Hydrogen Bonding ; Arginine/chemistry ; Arginine/genetics ; Crystallography, X-Ray ; Humans

Replicating PET Hydrolytic Activity by Positioning Active Sites with Smaller Synthetic Protein Scaffolds.

Autori: Ding Y Zhang S Kong X a ďalší

Zdroj: Advanced science (Weinheim, Baden-Wurttemberg, Germany) [Adv Sci (Weinh)] 2025 May; Vol. 12 (18), pp. e2500859. Date of Electronic Publication: 2025 Mar 16.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: WILEY-VCH Country of Publication: Germany NLM ID: 101664569 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2198-3844 (Electronic) Linking ISSN: 21983844 NLM ISO Abbreviation: Adv Sci (Weinh) Subsets: MEDLINE

Výrazy zo slovníka MeSH: Polyethylene Terephthalates*/chemistry , Polyethylene Terephthalates*/metabolism , Catalytic Domain* , Protein Engineering*/methods , Carboxylic Ester Hydrolases*/chemistry , Carboxylic Ester Hydrolases*/metabolism , Hydrolases*/metabolism , Hydrolases*/chemistry, Hydrolysis

Regulatory and Catalytic Domains of Poly(ADP-ribose) Polymerases Cross-Complement for DNA-Break-Dependent Allosteric Stimulation of Catalytic Activity.

Autori: Milee M Greeshma SP Deeksha W a ďalší

Zdroj: ACS chemical biology [ACS Chem Biol] 2025 Mar 21; Vol. 20 (3), pp. 607-619. Date of Electronic Publication: 2025 Feb 12.

Spôsob vydávania: Journal Article; Research Support, Non-U.S. Gov't

Informácie o časopise: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101282906 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1554-8937 (Electronic) Linking ISSN: 15548929 NLM ISO Abbreviation: ACS Chem Biol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Poly(ADP-ribose) Polymerases*/metabolism , Poly(ADP-ribose) Polymerases*/chemistry , Catalytic Domain*, Allosteric Regulation ; Humans ; Animals ; Poly (ADP-Ribose) Polymerase-1/metabolism ; Poly (ADP-Ribose) Polymerase-1/chemistry ; Protein Domains

Non-Hydroxamate Inhibitors of IspC Enzyme in the MEP Pathway: Structural Insights and Drug Development Potential.

Autori: Zhou Y Wang J Sun Y a ďalší

Zdroj: Chemical biology & drug design [Chem Biol Drug Des] 2025 Mar; Vol. 105 (3), pp. e70086.

Spôsob vydávania: Journal Article; Review

Informácie o časopise: Publisher: Wiley-Blackwell Country of Publication: England NLM ID: 101262549 Publication Model: Print Cited Medium: Internet ISSN: 1747-0285 (Electronic) Linking ISSN: 17470277 NLM ISO Abbreviation: Chem Biol Drug Des Subsets: MEDLINE

Výrazy zo slovníka MeSH: Enzyme Inhibitors*/chemistry , Enzyme Inhibitors*/pharmacology , Enzyme Inhibitors*/metabolism , Aldose-Ketose Isomerases*/antagonists & inhibitors , Aldose-Ketose Isomerases*/metabolism , Aldose-Ketose Isomerases*/chemistry , Catalytic Domain*, Structure-Activity Relationship ; Humans ; Hydroxamic Acids/chemistry ; Hydroxamic Acids/metabolism ; Hydroxamic Acids/pharmacology ; Drug Development

Biochemical characterization of the catalytic domain from a novel hyperthermophilic β-glucanase and its application for KOS production.

Autori: Mo H Li Z Liu W a ďalší

Zdroj: International journal of biological macromolecules [Int J Biol Macromol] 2025 Mar; Vol. 297, pp. 139622. Date of Electronic Publication: 2025 Jan 09.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 7909578 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0003 (Electronic) Linking ISSN: 01418130 NLM ISO Abbreviation: Int J Biol Macromol Subsets: MEDLINE

Výrazy zo slovníka MeSH: Catalytic Domain* , Oligosaccharides*/chemistry , Oligosaccharides*/biosynthesis, Substrate Specificity ; Molecular Docking Simulation ; Hydrolysis ; Hydrogen-Ion Concentration ; Enzyme Stability ; Temperature ; Mannans/chemistry ; Mannans/metabolism

N-linked glycosylation affects catalytic parameters and fluctuation of the active center of Aspergillus awamori exo-inulinase.

Autori: Dotsenko A Denisenko Y Zorov I a ďalší

Zdroj: Protein expression and purification [Protein Expr Purif] 2025 Feb; Vol. 226, pp. 106613. Date of Electronic Publication: 2024 Sep 30.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Academic Press Country of Publication: United States NLM ID: 9101496 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1096-0279 (Electronic) Linking ISSN: 10465928 NLM ISO Abbreviation: Protein Expr Purif Subsets: MEDLINE

Výrazy zo slovníka MeSH: Aspergillus*/enzymology , Aspergillus*/genetics , Glycoside Hydrolases*/chemistry , Glycoside Hydrolases*/genetics , Glycoside Hydrolases*/metabolism , Catalytic Domain*, Glycosylation ; Fungal Proteins/chemistry ; Fungal Proteins/genetics ; Fungal Proteins/metabolism ; Molecular Dynamics Simulation ; Penicillium/enzymology ; Penicillium/genetics ; Substrate Specificity ; Recombinant Proteins/genetics ; Recombinant Proteins/chemistry ; Recombinant Proteins/metabolism

Crystallographic mining driven computer-guided approach to identify the ASK1 inhibitor likely to perturb the catalytic region.

Autori: Haider M Sharma S Agrahari AK a ďalší

Zdroj: Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2025 Feb; Vol. 43 (3), pp. 1290-1304. Date of Electronic Publication: 2023 Dec 09.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Taylor & Francis Country of Publication: England NLM ID: 8404176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1538-0254 (Electronic) Linking ISSN: 07391102 NLM ISO Abbreviation: J Biomol Struct Dyn Subsets: MEDLINE

Výrazy zo slovníka MeSH: MAP Kinase Kinase Kinase 5*/antagonists & inhibitors , MAP Kinase Kinase Kinase 5*/chemistry , MAP Kinase Kinase Kinase 5*/metabolism , Catalytic Domain*/drug effects , Protein Kinase Inhibitors*/chemistry , Protein Kinase Inhibitors*/pharmacology, Humans ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; Protein Binding ; Crystallography, X-Ray ; Structure-Activity Relationship

3-Halo-3-nitro-aza/thioflavanones: DNMT inhibitors with a two-site binding mode in the hDNMT3A catalytic pocket.

Autori: Serhouni A Calzaferri F Bessina Y a ďalší

Zdroj: Bioorganic & medicinal chemistry [Bioorg Med Chem] 2025 Feb 01; Vol. 118, pp. 117988. Date of Electronic Publication: 2024 Nov 28.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Science Country of Publication: England NLM ID: 9413298 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1464-3391 (Electronic) Linking ISSN: 09680896 NLM ISO Abbreviation: Bioorg Med Chem Subsets: MEDLINE

Výrazy zo slovníka MeSH: Catalytic Domain* , DNA (Cytosine-5-)-Methyltransferases*/antagonists & inhibitors , DNA (Cytosine-5-)-Methyltransferases*/metabolism , Molecular Docking Simulation* , Enzyme Inhibitors*/chemistry , Enzyme Inhibitors*/pharmacology , Enzyme Inhibitors*/chemical synthesis, Humans ; Flavanones/chemistry ; Flavanones/pharmacology ; Flavanones/chemical synthesis ; Structure-Activity Relationship ; DNA Methyltransferase 3A ; Binding Sites

Active site-inspired multicopper laccase-like nanozymes for detection of phenolic and catecholamine compounds.

Autori: Fan J Pu Y Wang Y a ďalší

Zdroj: Analytica chimica acta [Anal Chim Acta] 2025 Jan 22; Vol. 1336, pp. 343529. Date of Electronic Publication: 2024 Dec 05.

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 0370534 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-4324 (Electronic) Linking ISSN: 00032670 NLM ISO Abbreviation: Anal Chim Acta Subsets: MEDLINE

Výrazy zo slovníka MeSH: Laccase*/chemistry , Laccase*/metabolism , Phenols*/chemistry , Phenols*/analysis , Copper*/chemistry , Catalytic Domain* , Catecholamines*/analysis , Catecholamines*/chemistry , Catecholamines*/metabolism, Biomimetic Materials/chemistry ; Limit of Detection ; Catalysis ; Colorimetry/methods

SCREEN: A Graph-based Contrastive Learning Tool to Infer Catalytic Residues and Assess Enzyme Mutations.

Autori: Pan T Bi Y Wang X a ďalší

Zdroj: Genomics, proteomics & bioinformatics [Genomics Proteomics Bioinformatics] 2025 Jan 15; Vol. 22 (6).

Spôsob vydávania: Journal Article

Informácie o časopise: Publisher: Oxford University Press on behalf of Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation and Genetics Society of China Country of Publication: England NLM ID: 101197608 Publication Model: Print Cited Medium: Internet ISSN: 2210-3244 (Electronic) Linking ISSN: 16720229 NLM ISO Abbreviation: Genomics Proteomics Bioinformatics Subsets: MEDLINE

Výrazy zo slovníka MeSH: Mutation* , Enzymes*/genetics , Enzymes*/chemistry , Enzymes*/metabolism , Catalytic Domain* , Neural Networks, Computer* , Software* , Computational Biology*/methods, Machine Learning ; Humans