Suchergebnisse - "Biology"

Integrative Multi-Omics and Artificial Intelligence: A New Paradigm for Systems Biology.

Autoren: Kant S Deepika Roy S

Quelle: Omics : a journal of integrative biology [OMICS] 2025 Dec; Vol. 29 (12), pp. 576-587. Date of Electronic Publication: 2025 Nov 07.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 101131135 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8100 (Electronic) Linking ISSN: 15362310 NLM ISO Abbreviation: OMICS Subsets: MEDLINE

MeSH-Schlagworte: Systems Biology*/methods , Artificial Intelligence* , Genomics*/methods, Humans ; Metabolomics/methods ; Proteomics/methods ; Synthetic Biology/methods ; Computational Biology/methods ; Machine Learning ; Multiomics

50 Years Journal of Mathematical Biology.

Autoren: Hillen T Marciniak-Czochra A

Quelle: Journal of mathematical biology [J Math Biol] 2025 Oct 06; Vol. 91 (5), pp. 53. Date of Electronic Publication: 2025 Oct 06.

Publikationsart: Historical Article; Editorial

Info zur Zeitschrift: Publisher: Springer Verlag Country of Publication: Germany NLM ID: 7502105 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-1416 (Electronic) Linking ISSN: 03036812 NLM ISO Abbreviation: J Math Biol Subsets: MEDLINE

MeSH-Schlagworte: Periodicals as Topic*/history , Biology*, History, 21st Century ; History, 20th Century ; Humans ; Mathematical Concepts ; Mathematics ; Anniversaries and Special Events ; Computational Biology/history ; Systems Biology/history

Advances and Future Perspectives of Synechocystis sp. as a Microbial Cell Factory for Biomanufacturing.

Autoren: He H Gao K Mao B et al.

Quelle: Biotechnology journal [Biotechnol J] 2025 Nov; Vol. 20 (11), pp. e70162.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Wiley-VCH Verlag Country of Publication: Germany NLM ID: 101265833 Publication Model: Print Cited Medium: Internet ISSN: 1860-7314 (Electronic) Linking ISSN: 18606768 NLM ISO Abbreviation: Biotechnol J Subsets: MEDLINE

MeSH-Schlagworte: Synechocystis*/metabolism , Synechocystis*/genetics , Synthetic Biology*/methods , Biotechnology*/methods , Metabolic Engineering*/methods, Industrial Microbiology ; Computational Biology

Verification and reproducible curation of the BioModels repository.

Autoren: Smith LP Malik-Sheriff RS Nguyen TVN et al.

Quelle: PLoS computational biology [PLoS Comput Biol] 2025 Dec 04; Vol. 21 (12), pp. e1013239. Date of Electronic Publication: 2025 Dec 04 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Programming Languages* , Systems Biology*/methods , Data Curation*/methods , Databases, Factual* , Models, Biological*, Reproducibility of Results ; Computer Simulation ; Computational Biology/methods ; Humans

[A review of security, safety, and duality issues in the field of biology].

Transliterierter Titel: Revue des enjeux de sûreté, de sécurité et de dualité dans le domaine biologique.

Autoren: Braun N

Quelle: Comptes rendus biologies [C R Biol] 2025 Nov 18; Vol. 348, pp. 265-274. Date of Electronic Publication: 2025 Nov 18.

Publikationsart: Journal Article; Review; English Abstract; News

Info zur Zeitschrift: Publisher: Académie des sciences Country of Publication: France NLM ID: 101140040 Publication Model: Electronic Cited Medium: Internet ISSN: 1768-3238 (Electronic) Linking ISSN: 16310691 NLM ISO Abbreviation: C R Biol Subsets: MEDLINE

MeSH-Schlagworte: Security Measures* , Biology* , Safety*, Humans ; COVID-19/epidemiology ; France/epidemiology ; SARS-CoV-2 ; Pandemics ; Synthetic Biology

Data-driven identification of biological systems using multi-scale analysis.

Autoren: Muhammed I Manias DM Goussis DA et al.

Quelle: PLoS computational biology [PLoS Comput Biol] 2025 Nov 06; Vol. 21 (11), pp. e1013193. Date of Electronic Publication: 2025 Nov 06 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Models, Biological* , Systems Biology*/methods, Algorithms ; Neural Networks, Computer ; Nonlinear Dynamics ; Computational Biology/methods ; Computer Simulation

Optimization-based framework with flux balance analysis (FBA) and metabolic pathway analysis (MPA) for identifying metabolic objective functions.

Autoren: Wen CM Papoutsakis E Ierapetritou M

Quelle: PLoS computational biology [PLoS Comput Biol] 2025 Oct 27; Vol. 21 (10), pp. e1013635. Date of Electronic Publication: 2025 Oct 27 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Metabolic Networks and Pathways*/physiology , Metabolic Flux Analysis*/methods , Models, Biological* , Systems Biology*/methods, Algorithms ; Computational Biology/methods ; Computer Simulation

Single-cell foundation models: bringing artificial intelligence into cell biology.

Autoren: Baek S Song K Lee I

Quelle: Experimental & molecular medicine [Exp Mol Med] 2025 Oct; Vol. 57 (10), pp. 2169-2181. Date of Electronic Publication: 2025 Oct 01.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 9607880 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2092-6413 (Electronic) Linking ISSN: 12263613 NLM ISO Abbreviation: Exp Mol Med Subsets: MEDLINE

MeSH-Schlagworte: Single-Cell Analysis*/methods , Artificial Intelligence* , Cell Biology* , Models, Biological*, Humans ; Computational Biology/methods ; Genomics/methods ; Animals ; Deep Learning

AlphaDesign: a de novo protein design framework based on AlphaFold.

Autoren: Jendrusch MA Yang ALJ Cacace E et al.

Quelle: Molecular systems biology [Mol Syst Biol] 2025 Sep; Vol. 21 (9), pp. 1166-1189. Date of Electronic Publication: 2025 Jun 17.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

MeSH-Schlagworte: Protein Engineering*/methods , Proteins*/chemistry , Proteins*/genetics , Computational Biology*/methods, Synthetic Biology/methods ; Models, Molecular ; Protein Folding ; Protein Conformation ; Algorithms

Longitudinal big biological data in the AI era.

Autoren: Mardinoglu A Turkez H Shong M et al.

Quelle: Molecular systems biology [Mol Syst Biol] 2025 Sep; Vol. 21 (9), pp. 1147-1165. Date of Electronic Publication: 2025 Aug 05.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: EMBO Press Country of Publication: Germany NLM ID: 101235389 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1744-4292 (Electronic) Linking ISSN: 17444292 NLM ISO Abbreviation: Mol Syst Biol Subsets: MEDLINE

MeSH-Schlagworte: Big Data* , Systems Biology*/methods , Artificial Intelligence*, Humans ; Precision Medicine/methods ; Genomics/methods ; Computational Biology/methods

Building basement membranes with computational approaches.

Autoren: Harris AS Lennon R Schwartz JM

Quelle: Matrix biology : journal of the International Society for Matrix Biology [Matrix Biol] 2025 Sep; Vol. 140, pp. 88-99. Date of Electronic Publication: 2025 Jul 09.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 9432592 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1569-1802 (Electronic) Linking ISSN: 0945053X NLM ISO Abbreviation: Matrix Biol Subsets: MEDLINE

MeSH-Schlagworte: Basement Membrane*/metabolism , Computational Biology*/methods , Extracellular Matrix Proteins*/metabolism , Extracellular Matrix Proteins*/genetics, Humans ; Laminin/metabolism ; Laminin/genetics ; Extracellular Matrix/metabolism ; Systems Biology/methods ; Collagen Type IV/metabolism ; Collagen Type IV/genetics ; Animals ; Protein Interaction Maps ; Databases, Protein

Reconciling multiple connectivity-based systems biology methods for drug repurposing.

Autoren: Gonzalez Gomez C Rosa-Calatrava M Fouret J

Quelle: Briefings in bioinformatics [Brief Bioinform] 2025 Jul 02; Vol. 26 (4).

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH-Schlagworte: Drug Repositioning*/methods , Systems Biology*/methods, Humans ; Algorithms ; Computational Biology/methods

SBMLNetwork: A framework for standards-based visualization of biochemical models.

Autoren: Heydarabadipour A Smith L Hellerstein JL et al.

Quelle: PLoS computational biology [PLoS Comput Biol] 2025 Sep 22; Vol. 21 (9), pp. e1013128. Date of Electronic Publication: 2025 Sep 22 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Software* , Systems Biology*/methods , Models, Biological*, Computational Biology/methods

CloneFast: A simple plasmid design and construction guide for labs venturing into synthetic biology.

Autoren: Fung V Tiwade PB Fenton OS

Quelle: STAR protocols [STAR Protoc] 2025 Sep 19; Vol. 6 (3), pp. 104025. Date of Electronic Publication: 2025 Aug 06.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Cell Press Country of Publication: United States NLM ID: 101769501 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-1667 (Electronic) Linking ISSN: 26661667 NLM ISO Abbreviation: STAR Protoc Subsets: MEDLINE

MeSH-Schlagworte: Plasmids*/genetics , Synthetic Biology*/methods, Computational Biology/methods

Streamline automated biomedical discoveries with agentic bioinformatics.

Autoren: Zhou J Jiang J Han Z et al.

Quelle: Briefings in bioinformatics [Brief Bioinform] 2025 Aug 31; Vol. 26 (5).

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH-Schlagworte: Computational Biology*/methods , Artificial Intelligence* , Biomedical Research*, Humans ; Precision Medicine ; Drug Discovery ; Synthetic Biology

MODA: a graph convolutional network-based multi-omics integration framework for unraveling hub molecules and disease mechanisms.

Autoren: Zhao J Zhou Y Bao H et al.

Quelle: Briefings in bioinformatics [Brief Bioinform] 2025 Aug 31; Vol. 26 (5).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH-Schlagworte: Prostatic Neoplasms*/metabolism , Prostatic Neoplasms*/genetics , Prostatic Neoplasms*/pathology , Computational Biology*/methods , Genomics*/methods, Humans ; Algorithms ; Machine Learning ; Male ; Systems Biology/methods ; Multiomics

Computational identification of small molecules for increased gene expression by synthetic circuits in mammalian cells.

Autoren: Pisani M Calandra F Rinaldi A et al.

Quelle: Nature communications [Nat Commun] 2025 Aug 04; Vol. 16 (1), pp. 7160. Date of Electronic Publication: 2025 Aug 04.

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

MeSH-Schlagworte: Computational Biology*/methods , Gene Regulatory Networks*/drug effects , Small Molecule Libraries*/pharmacology , Gene Expression*/drug effects , Gene Expression Regulation*/drug effects, Humans ; Animals ; HEK293 Cells ; Synthetic Biology/methods

Dynamic gene regulatory network inference from single-cell data using optimal transport.

Autoren: Lamoline F Haasler I Karlsson J et al.

Quelle: Bioinformatics (Oxford, England) [Bioinformatics] 2025 Aug 02; Vol. 41 (8).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

MeSH-Schlagworte: Gene Regulatory Networks* , Single-Cell Analysis*/methods , Computational Biology*/methods, Parkinson Disease/genetics ; Humans ; Algorithms ; Software ; Systems Biology/methods

Jaxkineticmodel: Neural ordinary differential equations inspired parameterization of kinetic models.

Autoren: van Lent P Bunkova O Magyar B et al.

Quelle: PLoS computational biology [PLoS Comput Biol] 2025 Jul 07; Vol. 21 (7), pp. e1012733. Date of Electronic Publication: 2025 Jul 07 (Print Publication: 2025).

Publikationsart: Journal Article

Info zur Zeitschrift: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MeSH-Schlagworte: Models, Biological* , Systems Biology*/methods , Neural Networks, Computer* , Software*, Kinetics ; Computer Simulation ; Algorithms ; Programming Languages ; Humans ; Computational Biology/methods ; Glycolysis

Data-driven synthetic microbes for sustainable future.

Autoren: Mariam I Rova U Christakopoulos P et al.

Quelle: NPJ systems biology and applications [NPJ Syst Biol Appl] 2025 Jul 07; Vol. 11 (1), pp. 74. Date of Electronic Publication: 2025 Jul 07.

Publikationsart: Journal Article; Review

Info zur Zeitschrift: Publisher: Nature Publishing Group in partnership with SBI, The Systems Biology Institute Country of Publication: England NLM ID: 101677786 Publication Model: Electronic Cited Medium: Internet ISSN: 2056-7189 (Electronic) Linking ISSN: 20567189 NLM ISO Abbreviation: NPJ Syst Biol Appl Subsets: MEDLINE

MeSH-Schlagworte: Synthetic Biology*/methods , Sustainable Development*, Biotechnology/methods ; Systems Biology/methods ; Machine Learning