Výsledky vyhľadávania - "Bacteria metabolism"

Seed-borne bacteria drive wheat rhizosphere microbiome assembly via niche partitioning and facilitation

Autori: Daniel Garrido-Sanz Christoph Keel

Zdroj: Nat Microbiol
Nature microbiology, vol. 10, no. 5, pp. 1130-1144

Predmety: Bacteria, Microbiota, RNA, Ribosomal, 16S, Rhizosphere, Seeds, Metagenomics, Triticum/microbiology, Soil Microbiology, Microbiota/genetics, Seeds/microbiology, Bacteria/genetics, Bacteria/classification, Bacteria/metabolism, Bacteria/isolation & purification, RNA, Ribosomal, 16S/genetics, Plant Roots/microbiology, Plant Roots, Article, Triticum

Popis súboru: application/pdf

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40140705
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_3E77C388B6CF8
https://serval.unil.ch/notice/serval:BIB_3E77C388B6CF
https://serval.unil.ch/resource/serval:BIB_3E77C388B6CF.P001/REF.pdf

Bioenergetics evolution: the link between Earth’s and Life’s history: the link between Earth's and Life's history

Autori: Anastasiia Padalko Val Karavaeva Jordi Zamarreno Beas a ďalší

Zdroj: Philosophical transactions : biological sciences

Predmety: Archaea/genetics, Philosophy, 106005 Bioinformatik, Bacteria/metabolism, Earth, Human medicine, Planet, 106005 Bioinformatics, Energy Metabolism, Bacterial Physiological Phenomena, Biology, Biological Evolution, Phylogeny

Prístupová URL adresa: https://repository.uantwerpen.be/docstore/d:irua:30176
https://hdl.handle.net/10067/2159840151162165141

Peptidoglycan-outer membrane attachment generates periplasmic pressure to prevent lysis in Gram-negative bacteria

Autori: Deghelt, Michaël Cho, Seung-Hyun Sun, Jiawei a ďalší

Prispievatelia: Deghelt, Michaël Cho, Seung-Hyun Sun, Jiawei a ďalší

Predmety: Peptidoglycan/metabolism, Bacteriolysis, Osmotic Pressure, Bacterial Outer Membrane/metabolism, Cell Membrane/metabolism, Escherichia coli/metabolism, Escherichia coli Proteins/metabolism, Cell Wall/metabolism, Gram-Negative Bacteria/metabolism, Periplasm/metabolism, Bacterial Outer Membrane Proteins/metabolism

Prístupová URL adresa: https://biblio.vub.ac.be/vubir/peptidoglycanouter-membrane-attachment-generates-periplasmic-pressure-to-prevent-lysis-in-gramnegative-bacteria(03b3ec92-b338-48a6-b74e-aa4fb9b5153a).html

Unusual Plastoquinones in Non‐Phototrophic Nitrifying Bacteria

Autori: Bale, Nicole J. Fujimura, Hayato Pjevac, Petra a ďalší

Zdroj: Bale, N J, Fujimura, H, Pjevac, P, Koenen, M, Ikeda, H, Itagaki, S, Yamamoto, Y, Palmetzhofer, J, Sedlacek, C J, Palabikyan, H, Sinninghe Damsté, J S, Wagner, M, Shiigi, H & Daims, H 2025, 'Unusual Plastoquinones in Non-Phototrophic Nitrifying Bacteria', Environmental Microbiology Reports, vol. 17, no. 4, e70174. https://doi.org/10.1111/1758-2229.70174

Predmety: Reverse electron transport, 106022 Mikrobiologie, Nitrospira, Respiration, Plastoquinone/metabolism, reverse electron transport, Nitrification, nitrification, Comammox, comammox, Bacteria/metabolism, 106022 Microbiology, methyl-plastoquinones, Oxidation-Reduction, Methyl-plastoquinones, respiration

Popis súboru: application/pdf

Prístupová URL adresa: https://ucrisportal.univie.ac.at/de/publications/4871693b-0a23-488c-bee5-f7e495ec467d
https://doi.org/10.1111/1758-2229.70174
http://www.scopus.com/inward/record.url?scp=105012600814&partnerID=8YFLogxK
https://vbn.aau.dk/ws/files/790778245/Open_Access_Article.pdf
https://vbn.aau.dk/da/publications/6a5c46f4-2310-4a70-ba62-720b4808c518
https://doi.org/10.1111/1758-2229.70174
https://research-portal.uu.nl/en/publications/c5c3281a-7453-4213-9e41-094077c4e49e
https://doi.org/10.1111/1758-2229.70174
https://hdl.handle.net/11353/10.2156840
https://phaidra.univie.ac.at/o:2156840
https://doi.org/10.1111/1758-2229.70174

Element cycling and microbial life in the hadal realm

Autori: Ronnie N. Glud Clemens Schauberger

Zdroj: Trends in Microbiology. 32:1045-1048

Predmety: Geologic Sediments, Bacteria, Bacteria/metabolism, Microbiota, Oceans and Seas, Geologic Sediments/microbiology, Seawater/microbiology, Hydrostatic Pressure, Microbiota/physiology, Seawater, Ecosystem

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39084910

Small intestinal microbiota: from taxonomic composition to metabolism

Autori: Simon Yersin Pascale Vonaesch

Zdroj: Trends in microbiology, vol. 32, no. 10, pp. 970-983

Predmety: Humans, Gastrointestinal Microbiome, Bacteria/classification, Bacteria/genetics, Bacteria/metabolism, Intestine, Small/microbiology, Animals, duodenum, ileum, jejunum, nutrient absorption, small intestinal bacterial overgrowth, small intestinal microbiota, Bacteria, Intestine, Small

Popis súboru: application/pdf

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38503579
https://serval.unil.ch/notice/serval:BIB_1EAF55E4ABF5
https://serval.unil.ch/resource/serval:BIB_1EAF55E4ABF5.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_1EAF55E4ABF51

Gut microbiota-mediated conversion of mangiferin to norathyriol alters short chain fatty acid and urate metabolism

Autori: Daan Bunt Markus Schwalbe Fittree Hayeeawaema a ďalší

Zdroj: Gut Microbes
Gut Microbes, Vol 17, Iss 1 (2025)

Predmety: Adult, Male, Feces/microbiology, Xanthones, norathyriol, RC799-869, Feces, Young Adult, Humans, Gastrointestinal Microbiome/drug effects, metabolites, gut microbiota, Bacteria, Fatty Acids, Diseases of the digestive system. Gastroenterology, Fatty Acids, Volatile, Xanthones/metabolism, Volatile/metabolism, Gastrointestinal Microbiome, Uric Acid, Bacteria/metabolism, Mangiferin, urate, C-glycosides, Female, Uric Acid/metabolism, Research Paper

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40401774
https://doaj.org/article/dd9071f49a9245919389d4c84d71d42a
https://research.rug.nl/en/publications/1c5cb5ea-cf43-42cb-bc31-2fec1d20ad97
https://doi.org/10.1080/19490976.2025.2508422
https://hdl.handle.net/11370/1c5cb5ea-cf43-42cb-bc31-2fec1d20ad97

A geological timescale for bacterial evolution and oxygen adaptation

Autori: Davín, Adrián A. Woodcroft, Ben J. Soo, Rochelle M. a ďalší

Zdroj: Davín, A A, Woodcroft, B J, Soo, R M, Morel, B, Murali, R, Schrempf, D, Clark, J W, Álvarez-Carretero, S, Boussau, B, Moody, E R R, Szánthó, L L, Richy, E, Pisani, D, Hemp, J, Fischer, W W, Donoghue, P C J, Spang, A, Hugenholtz, P, Williams, T A & Szöllősi, G J 2025, 'A geological timescale for bacterial evolution and oxygen adaptation', Science (New York, N.Y.), vol. 388, no. 6742, eadp1853, pp. 1-12. https://doi.org/10.1126/science.adp1853
Davín, A A, Woodcroft, B J, Soo, R M, Morel, B, Murali, R, Schrempf, D, Clark, J W, Alvarez-Carretero, S, Boussau, B, Moody, E R R, Szantho, L, Richy, E M A M, Pisani, D, Hemp, J, Fischer, W, Donoghue, P C J, Spang, A, Hugenholtz, P, Williams, T & Szollosi, G J 2025, 'A geological timescale for bacterial evolution and oxygen adaptation', Science, vol. 388, no. 6742, eadp1853, pp. 1-12. https://doi.org/10.1126/science.adp1853

Predmety: Oxygen, Machine Learning, Bacteria, Bacteria/metabolism, Cyanobacteria/genetics, Photosynthesis, Oxygen/metabolism, Cyanobacteria, Biological Evolution, Oxidation-Reduction, Adaptation, Physiological, Phylogeny

Popis súboru: application/pdf

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/40179162
https://purehost.bath.ac.uk/ws/files/370955353/main_manuscript_file_adp1853.pdf
https://research-information.bris.ac.uk/en/publications/e3cd1a15-477b-46b1-a3b0-aa801173cfb3
https://hdl.handle.net/1983/e3cd1a15-477b-46b1-a3b0-aa801173cfb3

Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle

Autori: Bridget B. McGivern Dylan R. Cronin Jared B. Ellenbogen a ďalší

Zdroj: Nat Microbiol

Predmety: 0301 basic medicine, Polyphenols/metabolism, 0303 health sciences, Bacteria, Arctic Regions, Monophenol Monooxygenase, Microbiota, Monophenol Monooxygenase/metabolism, Polyphenols, Permafrost, Article, Carbon, Carbon Cycle, Soil, 03 medical and health sciences, Bacteria/metabolism, Carbon/metabolism, Permafrost/microbiology, Oxidation-Reduction, Soil Microbiology, Ecosystem, Soil/chemistry

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38806673

Sediments from a seasonally euxinic coastal ecosystem show high nitrogen cycling potential

Autori: Isabel M. L. Rigutto Ştefania C. Sburlan Lars W. P. de Bont a ďalší

Zdroj: Environ Microbiol
Environmental Microbiology, 27, 7, pp. 1-15

Predmety: Nitrites/metabolism, Microbiota, Geologic Sediments/microbiology, Nitrous Oxide/metabolism, Eutrophication, Nitrates/metabolism, Nitrogen Cycle, Nitrification, Ammonium Compounds/metabolism, Ecological Microbiology, Bacteria/metabolism, Denitrification, Nitrogen/metabolism, Research programm of Radboud Institute for Biological and Environmental Sciences, Seasons, SDG 14 - Life Below Water, Lakes/microbiology, Oxidation-Reduction, Ecosystem, Research Article

Prístupová URL adresa: https://research-portal.uu.nl/en/publications/211b691a-67e3-46e1-968b-e2b9f7d64730
https://doi.org/10.1111/1462-2920.70139
https://repository.ubn.ru.nl//bitstream/handle/2066/320801/320801.pdf
https://hdl.handle.net/2066/320801

Genomic insights into the coupling of aChlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno

Autori: Saini, Jaspreet Singh Manni, Mose Hassler, Christel a ďalší

Zdroj: ISME J
The ISME journal, vol. 17, no. 6, pp. 903-915

Predmety: 576.5, Bacteria, Lakes/microbiology, Chlorella/genetics, Phylogeny, Bacteria/metabolism, Genomics, Sulfur/metabolism, Chlorella, Article, Lakes, Bacteria / metabolism, Chlorella / genetics, Lakes / microbiology, Sulfur / metabolism, Sulfur

Popis súboru: application/pdf

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/37031343
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_9CA7448C93E59
https://serval.unil.ch/notice/serval:BIB_9CA7448C93E5
https://serval.unil.ch/resource/serval:BIB_9CA7448C93E5.P001/REF.pdf

The evolution of short- and long-range weapons for bacterial competition

Autori: Booth, SC Smith, WPJ Foster, KR

Zdroj: Nat Ecol Evol
Booth, S C, Smith, W & Foster, K R 2023, ' The evolution of short-and long-range weapons for bacterial competition ', Nature Ecology & Evolution, vol. 7, no. 12, pp. 2080-2091 . https://doi.org/10.1038/s41559-023-02234-2

Predmety: Bacteriocins, Bacteria, Bacteria/metabolism, Pseudomonas aeruginosa, Humans, Bacteriocins/metabolism, Article

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38036633
http://www.scopus.com/inward/record.url?scp=85178034248&partnerID=8YFLogxK
https://doi.org/10.1038/s41559-023-02234-2
https://www.mendeley.com/catalogue/57bce252-8a07-3569-ad53-26eb52ddaaa2/
https://research.manchester.ac.uk/en/publications/aa56f03a-409c-4ca6-99c7-9b6067082f53

Taxonomic distribution of SbmA/BacA and BacA-like antimicrobial peptide transporters suggests independent recruitment and convergent evolution in host–microbe interactions

Autori: Smith, Nicholas, T Boukherissa, Amira Antaya, Kiera a ďalší

Prispievatelia: Smith, Nicholas, T Boukherissa, Amira Antaya, Kiera a ďalší

Zdroj: ISSN: 2057-5858.

Predmety: antimicrobial peptides, host-microbe interaction, molecular evolution, pathogenesis, peptide transport, rhizobium-legume symbioses, MESH: Antimicrobial Peptides* / genetics, MESH: Antimicrobial Peptides* / metabolism, MESH: Host Microbial Interactions* / genetics, MESH: Membrane Transport Proteins* / classification, MESH: Membrane Transport Proteins* / genetics, MESH: Membrane Transport Proteins* / metabolism, MESH: Phylogeny, MESH: Symbiosis, MESH: Antimicrobial Peptides* / pharmacology, MESH: Bacteria* / classification, MESH: Bacteria* / genetics, MESH: Bacteria* / metabolism, MESH: Bacterial Proteins* / genetics, MESH: Bacterial Proteins* / metabolism, MESH: Evolution, Molecular, MESH: Fabaceae / microbiology, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], [SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics, [SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis

Relation: info:eu-repo/semantics/altIdentifier/pmid/40238647; PUBMED: 40238647; WOS: 001491468200001

Dostupnosť: https://hal.science/hal-05085516
https://hal.science/hal-05085516v1/document
https://hal.science/hal-05085516v1/file/smith2025%20BacA.pdf
https://doi.org/10.1099/mgen.0.001380

Advances and new horizons in metabolic engineering of heterotrophic bacteria and cyanobacteria for enhanced lactic acid production

Autori: Rana, A. K. Thakur, V. K.

Zdroj: Rana, A K & Thakur, V K 2025, 'Advances and new horizons in metabolic engineering of heterotrophic bacteria and cyanobacteria for enhanced lactic acid production', Bioresource Technology, vol. 419, 131951. https://doi.org/10.1016/j.biortech.2024.131951

Predmety: Cyanobacteria, Fermentation, Lactic acid, Metabolic engineering, Mutation breeding, Photoautotrophic, Lactic Acid/biosynthesis, Cyanobacteria/metabolism, Metabolic Engineering/methods, Heterotrophic Processes, Bacteria/metabolism, /dk/atira/pure/sustainabledevelopmentgoals/affordable_and_clean_energy, name=SDG 7 - Affordable and Clean Energy

Popis súboru: application/pdf

Relation: info:eu-repo/semantics/altIdentifier/pmid/39647717; info:eu-repo/semantics/altIdentifier/pissn/0960-8524; info:eu-repo/semantics/altIdentifier/eissn/1873-2976

Dostupnosť: https://pure.sruc.ac.uk/en/publications/bf19aab1-3f3c-48e6-b682-355970045352
https://doi.org/10.1016/j.biortech.2024.131951
https://pure.sruc.ac.uk/ws/files/100932147/1-s2.0-S0960852424016559-main.pdf
https://www.scopus.com/pages/publications/85215360712

COBREXA 2: tidy and scalable construction of complex metabolic models.

Autori: KRATOCHVIL, Miroslav Wilken, St Elmo Ebenhöh, Oliver a ďalší

Prispievatelia: KRATOCHVIL, Miroslav Wilken, St Elmo Ebenhöh, Oliver a ďalší

Zdroj: Bioinformatics, 41 (2) (2025-02-04)

Predmety: Models, Biological, Metabolic Networks and Pathways, Computational Biology/methods, Bacteria/metabolism, Software, Algorithms, Engineering, computing & technology, Computer science, Life sciences, Ingénierie, informatique & technologie, Sciences informatiques, Sciences du vivant

Relation: info:eu-repo/grantAgreement/EC/H2020/951773; https://doi.org/10.5281/zenodo.14606532; urn:issn:1367-4803; urn:issn:1367-4811; https://orbilu.uni.lu/handle/10993/64409; info:hdl:10993/64409; https://orbilu.uni.lu/bitstream/10993/64409/1/btaf056.pdf; info:pmid:39921902; wos:001426055900001

Dostupnosť: https://orbilu.uni.lu/handle/10993/64409
https://orbilu.uni.lu/bitstream/10993/64409/1/btaf056.pdf
https://doi.org/10.1093/bioinformatics/btaf056

Caveolin-Mediated Endocytosis: Bacterial Pathogen Exploitation and Host-Pathogen Interaction

Autori: Barman, Dibyasri Drolia, Rishi

Zdroj: Biological Sciences Faculty Publications

Predmety: Anaplasma-phagocytophilum, Animals, Bacteria/metabolism, Caveolae, Caveolin-1, Caveolin 1 deficient mice, Caveolin-2, Caveolin-3, Caveolins/metabolism, Cell hybridization, Cell migration, Cell survival, Cells, Cellular caveolae, Cholesterol, Cytoplasm, Ehrlichia-chaffeensis, Endocytosis, Escherichia coli, Host pathogen interactions, Human beings, Humans, Immune evasion, Immune response, Internalization, Klebsiella pneumoniae, Lipid rafts, Lipids, Listeria, Listeria monocytogenes

Popis súboru: application/pdf

Relation: https://digitalcommons.odu.edu/biology_fac_pubs/618; https://digitalcommons.odu.edu/context/biology_fac_pubs/article/1636/viewcontent/Drolia_2024_Caveolin_MediatedEndocytosisBacterialPathogenExploitationandHostPathogenOCR.pdf

Dostupnosť: https://digitalcommons.odu.edu/biology_fac_pubs/618
https://doi.org/10.3390/cells14010002
https://digitalcommons.odu.edu/context/biology_fac_pubs/article/1636/viewcontent/Drolia_2024_Caveolin_MediatedEndocytosisBacterialPathogenExploitationandHostPathogenOCR.pdf

Temporal dynamics in the composition of metabolically active bacteria and fungi in the ileo-cecal lymph nodes of suckling and newly weaned piglets

Autori: Metzler-Zebeli, Barbara U. Lerch, Frederike Yosi, Fitra a ďalší

Zdroj: Sci Rep
Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Predmety: Lymph Nodes Microbiology, Cecum Metabolism, Bacteria Genetics, Swine, Science, Ileo-cecal lymph nodes, Weaning, Article, Ileum, Bacteriome, RNA, Ribosomal, 16S, Ileum Microbiology, Ileum Metabolism, Animals, Cecum, Neonatal piglets, Cecum Microbiology, Bacteria, RNA, Ribosomal, 16S Genetics, Fungi, Gastrointestinal Microbiome, Animals, Suckling, Lymph Nodes Metabolism, Bacteria Metabolism, Animals, Newborn, Medicine, Lymph Nodes, Bacteria Classification, Microbial translocation, Mycobiome

Popis súboru: application/pdf

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39730603
https://doaj.org/article/784eb3cbd8ed47d9a58f8a44280d294d

The respiratory chain of Klebsiella aerogenes in urine-like conditions: critical roles of NDH-2 and bd-terminal oxidases

Autori: Martín A. González-Montalvo Jennifer M. Sorescu Gabriella Baltes a ďalší

Zdroj: Front Microbiol
Frontiers in Microbiology, Vol 15 (2024)

Predmety: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Klebsiella aerogenes, NDH-2, oxidase, Enterobacter aerogenes, Microbiology, bacteria metabolism, QR1-502, bd-terminal oxidase

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39568993
https://doaj.org/article/bf19a5168b3f4135b6e6b491a0e24b45

Metaproteogenomics resolution of a high-CO2 aquifer community reveals a complex cellular adaptation of groundwater Gracilibacteria to a host-dependent lifestyle

Autori: Figueroa-Gonzalez, Perla Abigail Bornemann, Till L. V. Hinzke, Tjorven a ďalší

Zdroj: Microbiome
Microbiome, Vol 12, Iss 1, Pp 1-17 (2024)
Microbiome, 12(1):194

Predmety: Host-dependent bacteria, Proteomics, BD1-5, Bacteria, Research, Microbiota, QR100-130, Carbon Dioxide, Adaptation, Physiological, Proteomics [MeSH], Bacteria/metabolism [MeSH], Genome, Bacterial [MeSH], Bacteria/genetics [MeSH], Phylogeny [MeSH], Groundwater/microbiology [MeSH], CPR bacteria, Microbiota/genetics [MeSH], Bacteria/classification [MeSH], Genome-resolved metagenomics, Proteogenomics [MeSH], Germany [MeSH], Groundwater, Symbiotic bacteria, Bacteria/isolation, Carbon Dioxide/metabolism [MeSH], Metagenomics [MeSH], Adaptation, Physiological [MeSH], Microbial ecology, Germany, Metagenomics, Genome, Bacterial, Phylogeny, Proteogenomics

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39369255
https://doaj.org/article/0e2c4a2886404aeb9202206a7dee1ecf
https://repository.publisso.de/resource/frl:6500097

Neuroactive metabolites modulated by the gut microbiota in honey bees

Autori: Amélie Cabirol Silvia Moriano‐Gutierrez Philipp Engel

Zdroj: Molecular microbiology, vol. 122, no. 3, pp. 284-293

Predmety: Bacteria, Behavior, Animal, Hemolymph, Brain-Gut Axis, Metabolome, Animals, Brain, Metabolomics, Bees/microbiology, Gastrointestinal Microbiome/physiology, Brain/metabolism, Bacteria/metabolism, Bacteria/genetics, Brain-Gut Axis/physiology, Hemolymph/metabolism, Hemolymph/microbiology, Apis, bacteria, behavior, brain, nutrition, symbiosis, Bees, Gastrointestinal Microbiome

Popis súboru: application/pdf

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/37718573
https://serval.unil.ch/notice/serval:BIB_3ADF7D01186D
https://serval.unil.ch/resource/serval:BIB_3ADF7D01186D.P001/REF.pdf
http://nbn-resolving.org/urn/resolver.pl?urn=urn:nbn:ch:serval-BIB_3ADF7D01186D2