Search Results - "Bacteria Classification"

Creating unity: linking 16S rRNA gene sequence information to the core taxonomy of genomes.

Authors: Vinje, Hilde Rudi, Knut Snipen, Lars

Source: Environmental Microbiome. 10/28/2025, Vol. 20 Issue 1, p1-12. 12p.

Subject Terms: *RIBOSOMAL RNA, *BACTERIA classification, *CLUSTER analysis (Statistics), *PHYLOGENY, *PROKARYOTES

Two-Stage Hierarchical Pruning (THP-CNN) of Convolutional Neural Networks for Rapid Pathogenic Bacterial Detection Using High-Resolution Colony Images in Intensive Care Units.

Authors: Xie, Can Li, Kefeng

Source: Diagnostics (2075-4418). Sep2025, Vol. 15 Issue 18, p2349. 12p.

Subject Terms: *CONVOLUTIONAL neural networks, *BACTERIA classification, *MATHEMATICAL optimization, *REAL-time computing, *INTENSIVE care units, *DETECTION of microorganisms

Genomic Insights Into the Treponema Genus: Taxonomic Resolution of Treponema vincentii and Description of Two Novel Species, Treponema plautii sp. nov. and Treponema sinense sp. nov.

Authors: Fong, Jordan Y. H. Yeung, Man Lung Li, Tsz Tuen et al.

Source: Molecular Oral Microbiology. Sep2025, p1. 12p. 5 Illustrations.

Subject Terms: *PERIODONTAL disease, *BACTERIA classification, *TREPONEMA pallidum, *SPECIES, *GENOMICS

Deep Learning‐Assisted Rapid Bacterial Classification Based on Raman Spectroscopy of Bacteria Lysed by Acoustically Driven Fiber‐Tip Vibration.

Authors: Liu, Yukai Ji, Miaomiao Ren, Xiao et al.

Source: Advanced Science. 8/28/2025, Vol. 12 Issue 32, p1-13. 13p.

Subject Terms: *DEEP learning, *BACTERIA classification, *DRUG resistance in bacteria, *MACHINE learning, *ROUTINE diagnostic tests, *IDENTIFICATION of pathogenic microorganisms, *RAMAN spectroscopy

Benchmarking 16S rRNA Gene‐Based Approaches to Bacterial Taxonomy Assignment Based on Amplicon Sequencing With Illumina and Oxford Nanopore.

Authors: Hoffbeck, Carmen Middleton, Danielle M. R. L. Nelson, Nicola J. et al.

Source: International Journal of Microbiology. 8/13/2025, Vol. 2025, p1-13. 13p.

Subject Terms: *BACTERIA classification, *NUCLEOTIDE sequencing, *MICROBIAL communities, *PHYLOGENY, *RIBOSOMAL RNA, *BIOINFORMATICS

Viable bacterial communities in freshly pumped human milk and their changes during cold storage conditions.

Authors: Pivrncova, Eliska Bohm, Jan Barton, Vojtech et al.

Source: International Breastfeeding Journal. 5/29/2025, Vol. 20 Issue 1, p1-12. 12p.

Subject Terms: *BACTERIA classification, *FREEZING, *HETEROCYCLIC compounds, *REFRIGERATION & refrigerating machinery, *RESEARCH funding, *SCIENTIFIC observation, *BREAST milk, *DNA, *STREPTOCOCCUS, *MICROBIOTA, *LACTATION, *FOOD storage, *STAPHYLOCOCCUS, *CORYNEBACTERIUM, *SEQUENCE analysis

The relationship between platelet parameters and bacterial types in patients with bacteremia: A retrospective observational study.

Authors: Xiaoyan Liu Guanqun Yi Guoyang Zhang et al.

Source: Journal of Infection in Developing Countries. Mar2025, Vol. 19 Issue 3, p381-390. 10p.

Subject Terms: *LEUKOCYTE count, *BACTERIA classification, *LYMPHOCYTE count, *BACTEREMIA, *BACTERIAL cultures

作物青枯病发生与生态防控研究进展.

Alternate Title: Research progress of crop bacterial wilt occurrence and ecological control.

Authors: 张晨宁 杜甜甜 诸卫平 et al.

Source: Ecological Science. Mar2025, Vol. 44 Issue 2, p280-288. 9p.

Subject Terms: *RALSTONIA solanacearum, *BACTERIA classification, *BACTERIAL diseases, *POLLUTION, *BACTERIAL wilt diseases, *PATHOGENIC microorganisms

Paracoccus broussonetiae subsp. drimophilus subsp. nov., a Novel Subspecies Salt-Tolerant Endophytic Bacterium from Maize Root in Hunan.

Authors: Li, Xue Zhou, Chi Li, Ming et al.

Source: Life (2075-1729). Mar2025, Vol. 15 Issue 3, p354. 15p.

Subject Terms: *BACTERIA classification, *ENDOPHYTIC bacteria, *CROPS, *GLYCOLIPIDS, *GRAM-negative bacteria

Structure of Bacterial Communities in the Area Where the Selenga River Flows into Lake Baikal during the Ice Period.

Authors: Zakharenko, A. S. Tomberg, I. V. Suslova, M. Yu. et al.

Source: Water Resources; Dec2025, Vol. 52 Issue 6, p1230-1250, 21p

Subject Terms: BACTERIAL communities, MICROORGANISMS, BACTERIA classification, AQUATIC ecology, LAKES, BIOCHEMISTRY, COLD (Temperature), RAPIDS

Geographic Terms: LAKE Baikal (Russia)

Activity of Digestive Enzymes and Intestinal Microbiota in the African Catfish Clarias gariepinus.

Authors: Skvortsova, E. G. Golovanova, I. L. Filippov, A. A. et al.

Source: Microbiology (00262617); Dec2025, Vol. 94 Issue 6, p1087-1097, 11p

Subject Terms: DIGESTIVE enzymes, GUT microbiota, BACTERIA classification, CLARIAS gariepinus, AQUACULTURE, NUTRITIONAL requirements, BIOMASS production

Antimicrobial susceptibility of Porphyromonas spp. isolated from dogs with periodontal disease in South Korea.

Authors: Kim, Taesoo Choi, Yi-Don Hur, Won et al.

Source: Frontiers in Veterinary Science; 2025, p1-5, 5p

Subject Terms: VETERINARY medicine, PERIODONTAL disease, GINGIVAL diseases, MICROBIAL sensitivity tests, ORAL microbiology, BACTERIA classification, DRUG resistance in microorganisms

Geographic Terms: SOUTH Korea

Calculating fast differential genome coverages among metagenomic sources using micov.

Authors: Weng, Yuhan Guccione, Caitlin McDonald, Daniel et al.

Source: Communications Biology; 11/20/2025, Vol. 8 Issue 1, p1-9, 9p

Subject Terms: METAGENOMICS, GENOMICS, COMPARATIVE studies, BACTERIA classification, BIOINFORMATICS, MICROBIOTA, PREVOTELLA, NUCLEOTIDE sequencing

Streptococcus dysgalactiae subsp. equisimilis bacteremia in Finland: changes in emm-type distribution combined with clinical presentation.

Authors: Nevanlinna, Viivi Aittoniemi, Janne Huttunen, Reetta et al.

Source: BMC Infectious Diseases; 11/14/2025, Vol. 25 Issue 1, p1-9, 9p

Subject Terms: STREPTOCOCCUS, BACTEREMIA, SYMPTOMS, DISEASE prevalence, EPIDEMIOLOGICAL research, BACTERIA classification, SOFT tissue infections

Geographic Terms: FINLAND

淹水对茶园土壤养分和微生物群落结构的影响. (Chinese)

Alternate Title: Effects of Flooding on Soil Nutrients and Microbial Community Structure in Tea Plantations. (English)

Authors: 梁, 冬霞 郜, 礼阳 张, 风姬 et al.

Source: Ecology & Environmental Sciences; Nov2025, Vol. 34 Issue 11, p1739-1748, 10p

Subject Terms: SOILS, MICROBIAL communities, ORGANIC compounds, SOIL acidity, BACTERIA classification, FLOODS, TEA plantations

Characterization of the Fecal Metabolome in Patients With Early Systemic Sclerosis.

Authors: Young, Arissa C. Andréasson, Kristofer Labus, Jennifer et al.

Source: ACR Open Rheumatology; Nov2025, Vol. 7 Issue 11, p1-9, 9p

Subject Terms: BACTERIA classification, FECAL analysis, CROSS-sectional method, HIGH performance liquid chromatography, PREDICTIVE tests, EFFECT sizes (Statistics), RESEARCH funding, T-test (Statistics), SHORT-chain fatty acids, GUT microbiota, MULTIVARIATE analysis, STRUCTURAL equation modeling, DESCRIPTIVE statistics, OXIDATIVE stress, LONGITUDINAL method, METABOLITES, SYSTEMIC scleroderma, METABOLOMICS, PROTON pump inhibitors, DATA analysis software, COMPARATIVE studies, BIOMARKERS

Geographic Terms: SWEDEN

Exploring Relationships Within the Microbiome of Root Canal Infections and the Influence of Associated Clinical Parameters.

Authors: Mominkhan, Dana Brito, Luciana C. N. Yakubu, Abdul‐Rakeem et al.

Source: International Endodontic Journal; Nov2025, Vol. 58 Issue 11, p1751-1763, 13p

Subject Terms: MICROBIOTA, BACTERIA, PERIAPICAL periodontitis, MICROBIAL communities, SYMPTOMS, DIAGNOSIS, BACTERIA classification

Pre-trained ChatGPT for report generation in automated microbial identification and antibiotic susceptibility testing systems.

Authors: Hu, Liping Xu, Xiaohong Zhuang, Yingting et al.

Source: Scientific Reports; 10/16/2025, Vol. 15 Issue 1, p1-11, 11p

Subject Terms: CHATGPT, MEDICAL microbiology, NATURAL language processing, BACTERIA classification, REPORT writing, DOCUMENTATION standards, MICROBIAL sensitivity tests

Relative abundances of bacterial phyla are strong indicators of community-scale microbial growth rates in soil.

Authors: Osburn, Ernest D. Weissman, J. L. Strickland, Michael S. et al.

Source: Environmental Microbiome; 10/14/2025, Vol. 20 Issue 1, p1-12, 12p

Subject Terms: MICROBIAL growth, PROTEOBACTERIA, BACTERIA, SOIL microbiology, BIOINDICATORS, BACTERIA classification, METAGENOMICS

Differential characterization of medium-temperature Daqu from different geographical regions: bacterial profile, color, taste, and flavor.

Authors: Wang, Yurong Lei, Yan Zhang, Jianhui et al.

Source: World Journal of Microbiology & Biotechnology; Oct2025, Vol. 41 Issue 10, p1-16, 16p

Subject Terms: BACILLUS (Bacteria), LACTIC acid bacteria, ECOLOGICAL regions, BACTERIA classification, AROMATIC compounds, SENSORY perception, MICROBIAL diversity