Search Results - "((\"string algorithm\") OR (\"springer algorithm\"))~"

Near-Optimal Quantum Algorithms for String Problems

Authors: Massachusetts Institute of Technology. Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory Akmal, Shyan et al.

Source: Springer US

Index Terms: Article, http://purl.org/eprint/type/JournalArticle

URL: https://hdl.handle.net/1721.1/147771
https://doi.org/10.1007/s00453-022-01092-x
https://doi.org/10.1007/s00453-022-01092-x

An External-Memory Algorithm for String Graph Construction

Authors: Bonizzoni, P Della Vedova, G Pirola, Y et al.

Index Terms: External memory algorithms, Burrows–Wheeler transform, String graphs, Genome assembly, INF/01 - INFORMATICA, info:eu-repo/semantics/article

URL: http://hdl.handle.net/10281/112989
info:eu-repo/semantics/altIdentifier/wos/WOS:000400379500002
volume:78
issue:2
firstpage:394
lastpage:424
numberofpages:31
journal:ALGORITHMICA

Deep learning algorithms applied to computational chemistry.

Authors: Guzman-Pando A Ramirez-Alonso G Arzate-Quintana C et al.

Source: Molecular diversity [Mol Divers] 2024 Aug; Vol. 28 (4), pp. 2375-2410. Date of Electronic Publication: 2023 Dec 27.

Publication Type: Journal Article; Review

Journal Info: Publisher: ESCOM Science Publishers Country of Publication: Netherlands NLM ID: 9516534 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-501X (Electronic) Linking ISSN: 13811991 NLM ISO Abbreviation: Mol Divers Subsets: MEDLINE

MeSH Terms: Deep Learning* , Algorithms* , Computational Chemistry*/methods, Drug Discovery/methods

A Review on Efficient and Scalable Graph-Based Clustering Algorithms for Protein Complex Identification in PPI Networks.

Authors: Patra S Sahoo TR

Source: Proteins [Proteins] 2025 Aug 17. Date of Electronic Publication: 2025 Aug 17.

Publication Type: Journal Article; Review

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

Quantum-computing-enhanced algorithm unveils potential KRAS inhibitors.

Authors: Ghazi Vakili M Gorgulla C Snider J et al.

Source: Nature biotechnology [Nat Biotechnol] 2025 Jan 22. Date of Electronic Publication: 2025 Jan 22.

Publication Type: Journal Article

Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

ARIMA-Genetic Algorithm Approach for Forecasting Milk Production in India.

Authors: Pandit, Pramit Bakshi, Bishvajit Paul, Moumita et al.

Source: Asian Journal of Dairy & Food Research. Dec2024, Vol. 43 Issue 4, p784-789. 6p.

Current and future deep learning algorithms for tandem mass spectrometry (MS/MS)-based small molecule structure elucidation.

Authors: Liu Y De Vijlder T Bittremieux W et al.

Source: Rapid communications in mass spectrometry : RCM [Rapid Commun Mass Spectrom] 2025 May; Vol. 39 Suppl 1, pp. e9120. Date of Electronic Publication: 2021 May 26.

Publication Type: Journal Article

Journal Info: Publisher: John Wiley And Sons Ltd Country of Publication: England NLM ID: 8802365 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0231 (Electronic) Linking ISSN: 09514198 NLM ISO Abbreviation: Rapid Commun Mass Spectrom Subsets: PubMed not MEDLINE; MEDLINE

Elastic-Degenerate String Matching with 1 Error or Mismatch

Authors: Bernardini, Giulia Gabory, Esteban Pissis, Solon et al.

Contributors: Bernardini, Giulia Gabory, Esteban Pissis, Solon et al.

Source: Theory of Computing Systems

Subject Terms: String algorithms, Elastic-degenerate strings, string algorithms, approximate string matching, edit distance, Hamming distance, elastic-degenerate strings, Approximate string matching, Elastic-degenerate string, Edit distance, String algorithm, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]

File Description: application/pdf

Access URL: https://link.springer.com/article/10.1007/s00224-024-10194-8
https://hdl.handle.net/11368/3091558
https://hdl.handle.net/1871.1/fbd19d3a-5431-453a-a3e0-8cd5b1a5b811
https://doi.org/10.1007/s00224-024-10194-8
https://research.vu.nl/en/publications/fbd19d3a-5431-453a-a3e0-8cd5b1a5b811
https://inria.hal.science/hal-04747458v1
https://doi.org/10.1007/s00224-024-10194-8
https://inria.hal.science/hal-04747458v1/document
https://hdl.handle.net/2434/1131036
https://doi.org/10.1007/s00224-024-10194-8
https://link.springer.com/article/10.1007/s00224-024-10194-8
https://doi.org/10.1007/s00224-024-10194-8
https://hdl.handle.net/11368/3091558

Single-Cell Omics Analysis Reveals Immunological Dysregulation in COVID-19 and HIV: Identifying a Shared Abnormality of B Cell Activation via the Unfolded Protein Response and Diagnostic Biomarkers Using Machine Learning Algorithms.

Authors: Li F Zhao W Liu H et al.

Source: Journal of medical virology [J Med Virol] 2025 Aug; Vol. 97 (8), pp. e70538.

Publication Type: Journal Article

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 7705876 Publication Model: Print Cited Medium: Internet ISSN: 1096-9071 (Electronic) Linking ISSN: 01466615 NLM ISO Abbreviation: J Med Virol Subsets: MEDLINE

MeSH Terms: COVID-19*/immunology , COVID-19*/diagnosis , COVID-19*/genetics , HIV Infections*/immunology , HIV Infections*/diagnosis , HIV Infections*/genetics , Unfolded Protein Response*/immunology , Unfolded Protein Response*/genetics , B-Lymphocytes*/immunology, Humans ; Machine Learning ; Single-Cell Analysis/methods ; SARS-CoV-2/immunology ; Biomarkers ; Transcriptome ; Male ; Lymphocyte Activation/immunology ; Female ; Middle Aged ; Gene Expression Profiling ; Adult

Missing value replacement in strings and applications

Authors: G. Bernardini C. Liu G. Loukides et al.

Source: Data Min Knowl Discov

Subject Terms: String algorithms, String sanitization, string algorithm, forbidden pattern, missing value replacement, string sanitization, string algorithms, forbidden patterns, Forbidden patterns, Missing value replacement, Article

File Description: application/pdf

Access URL: https://pubmed.ncbi.nlm.nih.gov/39867462
https://research.vu.nl/en/publications/8a02a50e-06d3-4836-aac0-8c0e0992a4bd
https://doi.org/10.1007/s10618-024-01074-3
https://hdl.handle.net/1871.1/8a02a50e-06d3-4836-aac0-8c0e0992a4bd
https://hdl.handle.net/2434/1138695
https://doi.org/10.1007/s10618-024-01074-3
https://hdl.handle.net/11368/3096431

Efficient and robust search of microbial genomes via phylogenetic compression.

Authors: Břinda K Lima L Pignotti S et al.

Source: Nature methods [Nat Methods] 2025 Apr; Vol. 22 (4), pp. 692-697. Date of Electronic Publication: 2025 Apr 09.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

MeSH Terms: Phylogeny* , Data Compression*/methods , Genome, Microbial*/genetics , Genome, Bacterial* , Genomics*/methods , Computational Biology*/methods , Bacteria*/genetics , Bacteria*/classification, Algorithms ; Software ; Sequence Alignment/methods

Interactive evaluation of surgery skills in surgery simulators: A new method based on string matching algorithms

Authors: Universitat Politècnica de València. Departamento de Sistemas Informáticos y Computación - Departament de Sistemes Informàtics i Computació Universitat Politècnica de València. Instituto Interuniversitario de Investigación en Bioingeniería y Tecnología Orientada al Ser Humano - Institut Interuniversitari d'Investigació en Bioenginyeria i Tecnologia Orientada a l'Ésser Humà Universitat Politècnica de València. Departamento de Ingeniería Gráfica - Departament d'Enginyeria Gràfica et al.

Index Terms: Automatic evaluation of surgeon skills, Surgery simulation, Computer aided surgery, Minimally invasive surgery, EXPRESION GRAFICA EN LA INGENIERIA, LENGUAJES Y SISTEMAS INFORMATICOS, info:eu-repo/semantics/article

URL: http://hdl.handle.net/10251/38359

Solar photovoltaic converter controller using opposition-based reinforcement learning with butterfly optimization algorithm under partial shading conditions.

Authors: Aljafari B Balachandran PK Samithas D et al.

Source: Environmental science and pollution research international [Environ Sci Pollut Res Int] 2023 Jun; Vol. 30 (28), pp. 72617-72640. Date of Electronic Publication: 2023 May 13.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 9441769 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1614-7499 (Electronic) Linking ISSN: 09441344 NLM ISO Abbreviation: Environ Sci Pollut Res Int Subsets: MEDLINE

MeSH Terms: Algorithms* , Sunlight*, Computer Simulation ; Learning

Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm.

Authors: Chen Z Ge R Wang C et al.

Source: Mammalian genome : official journal of the International Mammalian Genome Society [Mamm Genome] 2024 Jun; Vol. 35 (2), pp. 241-255. Date of Electronic Publication: 2024 Mar 21.

Publication Type: Journal Article

Journal Info: Publisher: Springer-Verlag Country of Publication: United States NLM ID: 9100916 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1777 (Electronic) Linking ISSN: 09388990 NLM ISO Abbreviation: Mamm Genome Subsets: MEDLINE

MeSH Terms: Schizophrenia*/genetics , Algorithms*, Humans ; Gene Expression Profiling/methods ; Genetic Predisposition to Disease ; Transcriptome/genetics ; Computational Biology/methods

Methods for Pangenomic Core Detection.

Authors: Schulz T Parmigiani L Rempel A et al.

Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2024; Vol. 2802, pp. 73-106.

Publication Type: Journal Article

Journal Info: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

MeSH Terms: Software* , Genomics*/methods , Algorithms* , Computational Biology*/methods, Sequence Analysis, DNA/methods ; Humans ; High-Throughput Nucleotide Sequencing/methods

Research on the visual location method for strawberry picking points under complex conditions based on composite models.

Authors: Xie H Zhang Z Zhang K et al.

Source: Journal of the science of food and agriculture [J Sci Food Agric] 2024 Nov; Vol. 104 (14), pp. 8566-8579. Date of Electronic Publication: 2024 Jun 26.

Publication Type: Journal Article; Evaluation Study

Journal Info: Publisher: John Wiley & Sons Country of Publication: England NLM ID: 0376334 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0010 (Electronic) Linking ISSN: 00225142 NLM ISO Abbreviation: J Sci Food Agric Subsets: MEDLINE

MeSH Terms: Fragaria*/chemistry , Fruit*/chemistry , Algorithms*, Crop Production/methods ; Robotics ; Humans

Extension of CMSA with a Learning Mechanism: Application to the Far from Most String Problem

Authors: Pedro Pinacho-Davidson Christian Blum M. Angélica Pinninghoff et al.

Source: International Journal of Computational Intelligence Systems, Vol 17, Iss 1, Pp 1-16 (2024)

Subject Terms: Hybrid metaheuristics, Population-based algorithm, Optimization, String consensus problems, Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://doaj.org/toc/1875-6883

Access URL: https://doaj.org/article/75683e72ae0440c6a970b766af02e38d

Synergy of advanced machine learning and deep neural networks with consensus molecular docking for virtual screening of anaplastic lymphoma kinase inhibitors.

Authors: Trinh TC Phan TL To VT et al.

Source: Journal of computer-aided molecular design [J Comput Aided Mol Des] 2025 Sep 15; Vol. 39 (1), pp. 79. Date of Electronic Publication: 2025 Sep 15.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Netherlands NLM ID: 8710425 Publication Model: Electronic Cited Medium: Internet ISSN: 1573-4951 (Electronic) Linking ISSN: 0920654X NLM ISO Abbreviation: J Comput Aided Mol Des Subsets: MEDLINE

MeSH Terms: Anaplastic Lymphoma Kinase*/antagonists & inhibitors , Anaplastic Lymphoma Kinase*/chemistry , Anaplastic Lymphoma Kinase*/metabolism , Molecular Docking Simulation* , Protein Kinase Inhibitors*/chemistry , Protein Kinase Inhibitors*/pharmacology , Machine Learning* , Neural Networks, Computer* , Deep Learning* , Antineoplastic Agents*/chemistry , Antineoplastic Agents*/pharmacology, Humans ; Ligands ; Carcinoma, Non-Small-Cell Lung/drug therapy ; Lung Neoplasms/drug therapy ; Algorithms

Algorithms for Big Data : DFG Priority Program 1736

Authors: Hannah Bast Claudius Korzen Ulrich Meyer et al.

Resource Type: eBook.

Subjects: Computer algorithms, Big data

Categories: COMPUTERS / Networking / General, COMPUTERS / Computer Science, COMPUTERS / Database Administration & Management, COMPUTERS / Information Theory, MATHEMATICS / Applied

UniAligner: a parameter-free framework for fast sequence alignment.

Authors: Bzikadze AV Pevzner PA

Source: Nature methods [Nat Methods] 2023 Sep; Vol. 20 (9), pp. 1346-1354. Date of Electronic Publication: 2023 Aug 14.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

MeSH Terms: Genomics*/methods , Algorithms*, Humans ; Sequence Alignment ; Genome, Human